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    56 repositories

    • BI_Genotype_IDs_Generator

      Public
      ShinyApp to generate sample tracking files needed for BI-DArT workflow
      R
      •0•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • bi-web

      Public
      TypeScript
      •
      Apache License 2.0
      •1•7•0•22•Updated Jan 27, 2026Jan 27, 2026

    • bi-api

      Public
      Java
      •
      Apache License 2.0
      •1•8•0•14•Updated Jan 27, 2026Jan 27, 2026

    • BIGapp

      Public
      The BIG app is a user-friendly R Shiny app to analyze genomic data without needing to use command-line tools and works across different species ploidy.
      dartbioinformaticsgenomicsbreedingshiny-apps
      R
      •
      Apache License 2.0
      •7•5•1•2•Updated Jan 25, 2026Jan 25, 2026

    • bi-docker-stack

      Public
      Shell
      •0•3•0•0•Updated Jan 23, 2026Jan 23, 2026

    • BIGr

      Public
      This R package contains the functions developed within Breeding Insight to analyze diploid and polyploid breeding and genetic data
      R
      •
      Apache License 2.0
      •4•3•0•2•Updated Jan 22, 2026Jan 22, 2026

    • Hemp-Node-Detection

      Public
      Python
      •1•0•0•0•Updated Jan 20, 2026Jan 20, 2026

    • Alfalfa_ARR_QTL

      Public
      Scripts for Aphanomyces root rot QTL mapping and candidate gene prioritation.
      R
      •0•0•0•0•Updated Jan 12, 2026Jan 12, 2026

    • AlloMate

      Public
      AlloMate is a shiny app that simplifies mate allocation decisions for breeders.
      JavaScript
      •1•0•1•0•Updated Jan 7, 2026Jan 7, 2026

    • nemaquant

      Public
      JavaScript
      •
      Apache License 2.0
      •0•0•0•1•Updated Dec 19, 2025Dec 19, 2025

    • dartag_alleles

      Public
      Building allele database from DArTag missing allele discovery count files
      Python
      •0•0•0•0•Updated Nov 23, 2025Nov 23, 2025

    • RoeBox

      Public
      YOLOV8 (Roboflow 3.0) pipeline for counting and classifying trout eggs.
      Python
      •0•0•0•0•Updated Oct 6, 2025Oct 6, 2025

    • BIGapp-PanelHub

      Public
      Metadata store of marker panels for BIGapp downstream workflows
      0•0•0•0•Updated Sep 30, 2025Sep 30, 2025

    • Cranberry_DArTag_Panel_paper

      Public
      R
      •0•0•0•0•Updated Sep 17, 2025Sep 17, 2025

    • taf

      Public
      Test Automation Framework
      JavaScript
      •
      Apache License 2.0
      •0•0•0•4•Updated Sep 10, 2025Sep 10, 2025

    • DeltaBreed-Manuscript-data-files

      Public
      Data files for the PLoSONE manuscript describing DeltaBreed
      Apache License 2.0
      •0•0•0•0•Updated Sep 2, 2025Sep 2, 2025

    • brapi-Java-ProdServer

      Public
      BrAPI Java Production Server
      Java
      •
      MIT License
      •9•0•0•0•Updated Aug 28, 2025Aug 28, 2025

    • BIGr_documentation

      Public
      BIGr documentation with tutorials webpage
      HTML
      •
      MIT License
      •0•0•0•0•Updated Aug 22, 2025Aug 22, 2025

    • grape-leaf-morphometrics

      Public
      Exract the following traits from leaf images: area, length, width, height, serration, lobe.
      Python
      •0•0•0•0•Updated Aug 6, 2025Aug 6, 2025

    • DeltaBreed

      Public
      Open source data management software for specialty crop and animal breeders.
      Apache License 2.0
      •0•4•0•0•Updated Jul 28, 2025Jul 28, 2025

    • brapi-Java-TestServer

      Public archive
      BrAPI Java Spring-Boot Test Server
      Java
      •
      MIT License
      •9•0•0•1•Updated Jul 7, 2025Jul 7, 2025

    • MrBeanApp

      Public
      Web application
      R
      •
      Other
      •20•0•0•1•Updated Jun 12, 2025Jun 12, 2025

    • Lettuce_DArTag_marker_panel_paper

      Public
      This repository contains the scripts used to generate different results, files and figures used in the manuscript.
      R
      •0•0•0•0•Updated May 22, 2025May 22, 2025

    • brapi

      Public
      A java project with modules to interact with BrAPI data.
      Java
      •
      Apache License 2.0
      •1•4•2•5•Updated May 19, 2025May 19, 2025

    • tablesaw

      Public
      Java dataframe and visualization library
      Java
      •
      Apache License 2.0
      •654•0•0•0•Updated May 7, 2025May 7, 2025

    • QBMS

      Public
      R package to query Breeding Management System (BMS) database
      R
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated May 6, 2025May 6, 2025

    • detectron2-scripts

      Public
      0•0•0•0•Updated Apr 22, 2025Apr 22, 2025

    • grape_peduncle

      Public
      Test machine learning models to identify and measure grape cluster peduncles.
      Python
      •0•0•0•0•Updated Apr 17, 2025Apr 17, 2025

    • PecanVoucher

      Public
      Pecan voucher image analysis scripts
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Apr 17, 2025Apr 17, 2025

    • alfalfa_BLUE

      Public
      Create BLUES for use with GWAS on alfalafa data.
      R
      •0•0•0•0•Updated Apr 11, 2025Apr 11, 2025