Lettuce DArTag Marker Panel paper

This repository contains the scripts used to generate different results, files and figures used in the manuscript.

Marker_panel_creation

This directory contains R scripts for the 3K lettuce DArTag panel creation.

Realignment_variant_calling

This directory contains bash pipelines for sequence alignment, variance calling and preliminary SNP filtering

Validation_analysis

This directory contains R scripts for genotype data filtering, genotype data comparison and linkage map construction.