DeltaBreed-Manuscript-data-files

Data files for the PLoSONE manuscript describing DeltaBreed

Supplemental Data Files

All data have been abstracted from their original sources for testing and demonstration.

1. Fig 4 Plant Height Ontology Import File.xls DeltaBreed Import file, fictionalized trait ontology for Plant Height

2. Fig 5a Unknown GID 0 Import.xls DeltaBreed Import file, fictionalized pedigree referencing Unknown GID 0

3. Fig 5b Tangled Pedigree Import.xls DeltaBreed Import file, fictionalized pedigree referencing Unknown GID 7

4. Fig 6 DeltaBreed Germplasm with Pedigree Export.xls DeltaBreed export file, adapted data courtesy of Warren Chatwin, USDA-ARS Pecan Somerville, TX.

5. Fig 7 DeltaBreed Experiment Export 2025_Disease_Screen_001.xls DeltaBreed export file, fictionalized two environment disease challenge experiment

6. Fig 9 Potato Experiment Adapted for DeltaBreed.xls DeltaBreed import file, data adapted from published dataset. https://github.com/jendelman/StageWise/blob/main/vignettes/Vignette1.Rmd

DeltaBreed v1.0 data import templates

7. bi_ontology_template_v15.xls DeltaBreed Import template for trait ontology

8. bi_germplasm_import_template_v11.xls DeltaBreed Import template for germplasm

9. bi_experimental_template_v07.xls DeltaBreed Import template for experiments

10. bi_sample_submission_template_v01.xls DeltaBreed Import template for genotypic sample submission