Refactor estimate_truncation to use S3 class pattern#1221

Merged

sbfnk merged 82 commits intomainfrom

refactor/estimate-truncation-s3

Jan 19, 2026

Commits on Jan 5, 2026

Commits on Jan 9, 2026

Replace get_delay() with get_delays() returning named list

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Update documentation
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Revert "Use as.data.frame() in snapshots to avoid data.table print format issues"
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Add test for get_delays() fixed parameter values

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Remove internal element access from estimate_truncation example

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Remove extra components from stan_data in estimate_truncation

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Refactor get_delays and summary methods

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Use get_predictions() in plot.estimate_truncation

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Add print method for summary and improve deprecated accessors

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Fix line length lint issues in summarise.R

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Update estimate_truncation example to reflect summary changes

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Rename obs to preds in plot.estimate_truncation for clarity

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Use x$observations for raw data and get_predictions for CrIs in plot

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Refactor [[.estimate_truncation to delegate to $ method

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Compute predictions on demand from samples

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Remove last_confirm from get_predictions output

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get_predictions returns only predictions, no observations

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Add epinowfit superclass to estimate_truncation

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Simplify get_samples and fix dt variable naming

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Commits on Jan 13, 2026

Commits on Jan 15, 2026

Commits on Jan 16, 2026

Commits on Jan 19, 2026