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Conda to uv #390

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keller-mark merged 3 commits into from
Nov 27, 2024
Merged

Conda to uv #390

keller-mark merged 3 commits into from
Nov 27, 2024

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@keller-mark keller-mark commented Nov 20, 2024 •
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Fixes #377

Related to #364

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keller-mark commented Nov 21, 2024

Some notes:

  • Many of the scverse packages like anndata and scanpy keep restricting the minimum python version to only the officially-still-supported python versions. For example, this is currently 3.10
  • Many older versions of packages that were released pre-numpy-2 do not work with Numpy 2 but also do not specify in their dependencies that only Numpy 1 is supported (since at the time of release, numpy 2 did not exist yet). For example, scanpy pre-1.10.2 did not specify numpy<2 but will fail to import with numpy 2

tkakar
tkakar approved these changes Nov 22, 2024
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One minor comment. Looks good otherwise.

@keller-mark keller-mark merged commit a19bea9 into main Nov 27, 2024
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@keller-mark keller-mark deleted the keller-mark/uv branch November 27, 2024 21:44
@keller-mark keller-mark mentioned this pull request Nov 27, 2024
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@tkakar tkakar tkakar approved these changes

@NickAkhmetov NickAkhmetov Awaiting requested review from NickAkhmetov

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Use uv to manage dependencies in development environments, remove conda usage

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