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@whelena whelena commented Jun 6, 2025

Description

Minor aesthetic fixes for placement of CCF value lables in the single-sample densityplot

Checklist

  • This PR does NOT contain Protected Health Information (PHI). A repo may need to be deleted if such data is uploaded.
    Disclosing PHI is a major problem1 - Even a small leak can be costly2.

  • This PR does NOT contain germline genetic data3, RNA-Seq, DNA methylation, microbiome or other molecular data4.

  • This PR does NOT contain other non-plain text files, such as: compressed files, images (e.g. .png, .jpeg), .pdf, .RData, .xlsx, .doc, .ppt, or other output files.

  To automatically exclude such files using a .gitignore file, see here for example.

  • I have read the code review guidelines and the code review best practice on GitHub check-list.

  • I have set up or verified the main branch protection rule following the github standards before opening this pull request.

  • The name of the branch is meaningful and well formatted following the standards, using [AD_username (or 5 letters of AD if AD is too long)]-[brief_description_of_branch].

  • I have added the major changes included in this pull request to the CHANGELOG.md under the next release version or unreleased, and updated the date.

Footnotes

  1. UCLA Health reaches $7.5m settlement over 2015 breach of 4.5m patient records

  2. The average healthcare data breach costs $2.2 million, despite the majority of breaches releasing fewer than 500 records.

  3. Genetic information is considered PHI.
    Forensic assays can identify patients with as few as 21 SNPs

  4. RNA-Seq, DNA methylation, microbiome, or other molecular data can be used to predict genotypes (PHI) and reveal a patient's identity.

@whelena whelena requested a review from dan-knight June 6, 2025 20:14
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whelena commented Jun 12, 2025

This PR has turned into a general fixing of label spacings, including a fix for issue #183

@whelena whelena requested review from maotian06 and yashpatel6 and removed request for dan-knight July 29, 2025 23:38
@whelena whelena force-pushed the hwinata-spread-xlabels-densityplot branch from cf513aa to e4917a3 Compare July 30, 2025 00:10
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Generally looks good to me. Are there any examples of the expected differences in the plots?

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3 participants