FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation
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Dec 10, 2024 - Jupyter Notebook
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protein-generation
Here are 5 public repositories matching this topic...
Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequence Generation with Equivariant Denoising Diffusion Probabilistic Models"
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Jul 25, 2022 - Python
ProteinChat: A frontier protein-language generative model designed to decode the molecular language of proteins.
structural-protein-sequences protein-generation protein2text protein-chatgpt protgpt multimodal-protein text-protein protein-gpt protchat prot-chat proteinchat prot-text prot2text
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Mar 7, 2025 - Python
Implementation of FoldMark: Safeguarding Protein Structure Generative Models with Distributional and Evolutionary Watermarking
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Jul 3, 2025 - Python
🧬 EmbedDiff: A modular machine learning pipeline combining ESM2 embeddings, latent diffusion, and transformer-based decoding for de novo protein design
machine-learning deep-learning computational-biology pytorch transformer protein-design protein-engineering diffusion-models alphafold denoising-diffusion protein-generation esmfold esm-2 embeddiff ml-for-protein-engineering
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Aug 28, 2025 - Jupyter Notebook
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