A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
Implementation of Tranception, an attention network, paired with retrieval, that is SOTA for protein fitness prediction
PyPEF – Pythonic Protein Engineering Framework
Benchmarking uncertainty quantification methods on proteins.
PyPEF – Pythonic Protein Engineering Framework
Infrastructure for facilitating variant effect prediction using machine learning. Data class to combine assay, sequence, MSA and structure data to a coherent data package. Model cards for supervised and zeroshot ML models.
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