In this module, you will learn how to download raw sequence data, calculate differentially methylated regions, and run a canonical methyl-seq pipeline in Nextflow

idDMR - Identify Differentially Methylated Regions for microarray data

Persimmon: DMR Finder

Analyses for the manuscript "Prenatal PCB exposure alters a shared neurodevelopmental DNA methylation profile in mouse placenta and fetal brain".

R package for DNA Methylation Analysis (and Gene Expression Integration) for Illumina Infinium Array and BS-Seq Data