Detection of remote homology by comparison of protein language model representations
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Dec 16, 2024 - Python
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computional-biology
Here are 7 public repositories matching this topic...
A flexible and sensitive method for capturing and integrating multimodal epigenetic information from cell-free DNA (cfDNA) using a single experimental assay.
python machine-learning bioinformatics pypi sequencing dna methylation epigenetics ensemble-learning wgbs cfdna fragmentation multimodal nucleosome em-seq stacking-ensemble computional-biology
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Jun 6, 2025 - Jupyter Notebook
Splitpea Python package for building rewired protein-protein interaction networks from alternative splicing events
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Dec 15, 2025 - Python
Fine-tuning OLMo-7B with QLoRA & DeepChem for Molecular Toxicity Prediction on the Tox21 dataset.
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Jan 31, 2026 - Python
This repository contains a Google Colab notebook designed for running high-performance Molecular Dynamics (MD) simulations using NAMD 3 with CUDA acceleration.
bioinformatics molecular-dynamics molecular-dynamics-simulation drug-discovery drug-design namd computional-biology namd3
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Nov 24, 2025 - Jupyter Notebook
clique finder Combinatorial Algorithms in Bioinformatics classes (PUT)
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Mar 21, 2023 - C++
An AI-powered web app for interpreting miRNA enrichment results, prioritizing biological drivers, and designing follow-up experiments.
bioinformatics genomics sequencing flask-application enrichment-analysis rag generative-ai computional-biology llm-inference
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Jan 14, 2026 - Python
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