update readme #1
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stefanks
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Jan 12, 2017
stefanks
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rmillikin
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XRSHEERAN
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Minor GUI Fix
rmillikin
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nbollis
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Feb 14, 2024
* Updated Mzlib and made it so there are no errors on build * Adjusted digestionparams toml * fixed indexing engine without having a default product type * Fixed silac test * All Tests Pass! * Added toml test for new digestionparams * ope. Switched to proper version of mzLib * Added Omics to project.wxs * Updated ParsimonySequence to use interfaces * N-glyco search improvements (#2322) * reverted filtering method for psms passed to FlashLFQ * refactor glycospsmwriter and split from xlwriter * fix unit tests * rename N and O glyco test classes * refactor is patially working * files written to correct directory * now with glyco protein parsimony and writing all quantified proteins * nglycoBugged * n glyco output is correct now i think * yo * fix unit tests * fix more unit tests * dont need glyco stuff in writexl anymore * n glyco individual file unit test --------- Co-authored-by: Alex <[email protected]> Co-authored-by: MICHAEL SHORTREED <[email protected]> * updated mzlib version --------- Co-authored-by: trishorts <[email protected]> Co-authored-by: Alex <[email protected]> Co-authored-by: MICHAEL SHORTREED <[email protected]>
trishorts
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May 15, 2025
* Updated Mzlib and made it so there are no errors on build * Adjusted digestionparams toml * fixed indexing engine without having a default product type * Fixed silac test * All Tests Pass! * Added toml test for new digestionparams * ope. Switched to proper version of mzLib * Generalized Spectral Match * Added Omics to project.wxs * Updated ParsimonySequence to use interfaces * a * Udpated to mzlib pr 757 * Updated to mzlib pr 757 * Changed names of digestion params MinLength, MaxLength, and MaxMods to new naming convention * Implemented clone function in commonparams * Changed CommonParameters to use IDigestionParameters instead of DigestionParameters. Toml Properties changed to make this work, all tests pass * Formatted toml parameters * Generalized Deconvolution in MzLIb * Updated to mzlib after decon generalization * fixed issue caused by merge * updated mzlib to decon * updated mzlib version * Updated mzlib * Updated nuget * Resolved final conflicts * updated mzlib * Removed decon tolerance and ratio from toml * Updated classes after merge * Made changes for code coverage * Added test coverage to the bin class * Idk man its like 0.02% coverage * helpme.jpg * fixed errors in merge * Merged in changes * boosting code coverage elsewhere * removed unused node constructor * expanded gptmd test coverage * ugh * push to rerun appveyor * Fixed some merge issues. * PR Cleanup * Fix Broken Tests * Added Rnases * Tested file specific param reading writing * Installer Tweak * Expanded testing of specific parameter cases * Undid the mod type _isChecked changes * Comment Assumption * Move Tomls and Create new for testing * Update File Specific Parameters reading and overriding to handler more cases. * Revised param checking in XL
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