Updated SZ3 to v3.3.0 #359
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5d2fd2638 SZ3.3 (silx-kit#94) dd09ba727 Rename the flag ENABLE_GSL into SZ3_ENABLE_GSL (silx-kit#100) f600741d1 Fix NaN handling in the linear quantizer (silx-kit#91) c91eea70f start (silx-kit#96) 8ac77c58e Merge remote-tracking branch 'origin/master' 054967f8c bugfix hdf5 cd4a2611b Merge pull request silx-kit#90 from szcompressor/JLiu-1-patch-1 21c08473e Update README.md e8a6b1569 Merge pull request silx-kit#82 from szcompressor/JLiu-1-patch-1 ead8d62a6 Add QoZ description 8bcf24c52 update demo 854c4bf59 Merge pull request silx-kit#74 from rroohhh/msvc_build 81c2818ee fixup! add ALWAYS_INLINE 89df80e54 bump to 3.2.2 1c46e0765 Merge pull request silx-kit#73 from juntyr/patch-1 f67f91411 Guarantee that decompress doesn't modify the compressed data 88095a8bb clear build warning 45786ed54 fixbug for sz size bound 7ddd65dda add static_assert db63591e3 add ALWAYS_INLINE f1258442b improve build speed when SZ3_DEBUG_TIMINGS is on 2ddfac9b0 update logic for buffer size checking 07cee4b95 update logic for buffer size checking 95d906be9 update logic for buffer size checking f7b9432ee update logic for buffer size checking d1aaa33e9 update logic for buffer size checking 634add9d1 update logic for dispatcher 780870a04 Merge pull request silx-kit#70 from juntyr/patch-1 0f3dde778 Ensure lossless fallback always has enough space cebae4d1f Fix UB for small array compression 10ebed0f8 update logic for exceptions 29234fd91 update logic for lossless dispatch 4dafde041 improved error handing: throw exception and print to stderr instead of exit(0) 49a2694cf bugfix 00c672882 checking if compression mode is valid 8564514f1 bugfix for regression predictor 76a2d0a88 update hdf5 e79c03a46 bugfix for HDF5 68716ebc0 bugfix for openmp 61816ba12 1. update the logic to check data version 2. dispatcher logic change. SZ3 will enter lossless only mode automatically when needed 3. bug fix, see comments in Lossless_zstd.hpp 9bd968ff4 1. update the logic to check data version 2. dispatcher logic change. SZ3 will enter lossless only mode automatically when needed 3. bug fix, see comments in Lossless_zstd.hpp 1d8179986 1. update annotations 2. fix make warnings 67be543fd 1. update annotations 2. fix make warnings 18b44fafb 1. update annotations 2. fix make warnings 7105dd71a 1. update annotations 2. fix make warnings c7a23a95a 1. update annotations 2. fix make warnings 26e172083 1. update annotations 2. fix make warnings 876a3ca92 1. update annotations 2. fix make warnings dbd73bb87 1. move version check to config.load() 2. config.save() now use less space 3. update h5z-sz3 with readme and compact cd_value array 160e3e4f1 1. move version check to config.load() 2. config.save() now use less space 3. update h5z-sz3 with readme and compact cd_value array 03062dc40 1. move version check to config.load() 2. config.save() now use less space 3. update h5z-sz3 with readme and compact cd_value array 8a6220da6 1. move version check to config.load() 2. config.save() now use less space 3. update h5z-sz3 with readme and compact cd_value array a952c77dd add clang-format b3dab4018 Merge pull request silx-kit#60 from szcompressor/newapi d70c22264 update readme 35115beeb update readme 352c1a0f6 update compress api fe6eef7e3 update compress api 75c906dda update compress api ad47f20d2 update compress api 52b4f439c update compress api 7a5447c79 update compress api cb87901dd Merge remote-tracking branch 'origin/newapi' into newapi c1d6504e1 update hdf5 filter 533292f9f Merge branch 'refs/heads/master' into newapi b3dac0c65 update readme 3f478178d Merge pull request silx-kit#56 from juntyr/32bit-hash f8fc2cb33 fix int overflow in quantization e52a2c30f Add support for 32bit systems by falling back to std::unordered_map f6cae37f5 add link to fortran api 90c66bed1 modify MDZ CR calculation to include the first frame which is stored losslessly. 09494b13c fix bug in MDZ for 1D inputs dde630245 add noprediction compressor 47593621f bugfix fdd6dee6e API rewrite data version check a887550ed API rewrite data version check 5bab19c5d API rewrite data version check 1ea5d5b07 API rewrite data version check e78f4832f Add annotation be68d6cbe bug fix for openmp 800c3248e bug fix for interp d06710a55 bug fix for interp 7fc2cb519 bug fix for MDZ 3568914cd Merge remote-tracking branch 'origin/master' 5f835fb74 bug fix for MDZ be68d645b Merge pull request silx-kit#47 from robertu94/master e308ebf85 Merge branch 'master' of github.com:szcompressor/sz3 6198db715 default initalize config 162674f87 Merge pull request silx-kit#46 from mrmbernardi/patch-1 f834756f9 Fix SZFastFrontend::size_est() returning undefined value 13e79072e config bugfix 0ac567a76 Merge pull request silx-kit#45 from szcompressor/hdf5 d6beca327 add config support to hdf5 filter 05965ac2b update 1d lorenzo fast mode d2a03eae4 add lorenzo 1D fast mode fa9a7f179 Merge pull request silx-kit#44 from szcompressor/namespace 2437574dc change namespace from SZ to SZ3, to avoid conflict with SZ2 3236a6eb2 Merge branch 'huffman' 5995fa9f2 update HDF5 filter 1fc15171c update HDF5 filter aadaaeb90 change namespace from SZ to SZ3, to avoid conflict with SZ2 e1af6bea2 change namespace from SZ to SZ3, to avoid conflict with SZ2 bdc4b503b new huffman 9aee288dd Merge pull request silx-kit#43 from mrmbernardi/decompress_output ab7896ec4 update stateNum in preprocess_encode 44839697c Decompress function returns output matching original_dtype f420554d3 update readme 31d7cbb6a add annotation for interfaces d0606d3ae Merge pull request silx-kit#41 from szcompressor/mdz 3443ae347 update readme 1219a336d disable SZ3_DEBUG_TIMINGS by default 09d43dee5 clear runtime output for MDZ f051a8361 support 3D input for MDZ 89f3b7c78 bugfix in smoke test 5a1cf1aad Merge remote-tracking branch 'origin/master' 40e9b3de5 bugfix in smoke test 140e09e9c remove the print information (OpenMP threads = ), which might be annoying and seems unneeded. 1e1dc102e Merge pull request silx-kit#38 from aumuell/uint8 9b2bf8ad5 fix missing uint8_t with GCC 13 f7d865e6e Merge pull request silx-kit#37 from robertu94/hdf5_fix 73674f3db link to MPI when hdf5 is parallel 13f835d54 openmp bugfix 318fe953f openmp bugfix 612b4993d update pysz bce7f1202 Merge pull request silx-kit#32 from exmakhina/master 62d01de0b python: load library from a sensible default path, if not provided ce7fb031e change sprintf to snprintf 1b1abcf39 interp+lorenzo sampling bugfix 9f396935d bugfix git-subtree-dir: lib/SZ3 git-subtree-split: 5d2fd2638bc3512c0b4aed594d6e8a130d0d3ed2
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This PR aims at updating SZ3 to the current latest version (3.3.0).
As it is, it seg fault when reading data written with the previous version of the library:
python test/test.pyterminate with:This is due to an incompatible change in the
cd_valuesstored in the hdf5 file.With v3.3.0, the
cd_valuesare a dump of "SZ3::Config", saved by Config::save.See those links for save to/load from hdf5 cd_values:
Related to #351