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11 followers · 18 following
  • Washington State University
  • Spokane, Washington, US
  • 20:16 (UTC -08:00)

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Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

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Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

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siboles/README.md

👋 Hi, I'm Scott

I'm a Biomedical Engineer that researches orthopedic mechanics. I utilize computational modeling and simulation to explore these mechanics at the celluar, tissue, and joint (organ) scales. I have also developed tools to process, segment, and register 3-D images of articular cartilage obtained with laser scanning microscopy under varying mechanical conditions.

My expertise includes:

  • 🧬 Biomedical Engineering
  • 🐍 Python programming
  • 🏗️ Finite Element Analysis (FEA)
  • 📐 Computational Geometry
  • 📚 Continuum Mechanics
  • 📊 Data Science & Visualization
  • 🖼️ Image Processing, Segmentation, and Registration
  • 🎯 Numerical Optimization, Sensitivity Analysis, and Uncertainty Quantification

🚀 Featured Projects

  • lsmgridtrack: A Python package for deformable image registration of 3-D laser scanned images and analysis in biomechanics.
  • resonant_lsm: Segmentation and deformation analysis of microscopic images obtained with resonance laser scanning
  • bioMultiScale: A Python package for automating multiscale (submodeling) finite element analysis in articular cartilage
  • pyfebio: A Python API for the FEBio finite element solver

Coming Soon

I have several internal projects that will be open-sourced shortly including:

  • A framework for automating FEA pipelines particularly for articular joint modelling and implant design

Feel free to connect, collaborate, or check out my projects!

Pinned Loading

  1. pyCellAnalyst pyCellAnalyst Public

    pyCellAnalyst is a Python module for 3D reconstruction and deformation analysis of biological objects.

    Python 10 4

  2. lsmgridtrack lsmgridtrack Public

    A Python module to enable deformable image registration of 3D images with photobleached grids under mechanical loading.

    Python 3

  3. bioMultiScale bioMultiScale Public

    Automates the multiscale finite element modelling process for tissue to cellular scales. The original implementation was aimed at usage in articular cartilage, but may be extended to other applicat…

    Python 1

  4. resonant_lsm resonant_lsm Public

    Python

  5. febiosoftware/pyfebio febiosoftware/pyfebio Public

    A Python API for the FEBio Finite Element Solver

    Python 1 1