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spatial_neighbors unintended in-place change

Status: Open.

#1154 In scverse/squidpy;

· selmanozleyen opened on Apr 9, 2026

SNNRadiusBuilder implementation

Status: Open.

#1153 In scverse/squidpy;

· selmanozleyen opened on Apr 9, 2026

Bring minimal stalign function

squidpy2.0Everything releated to a Squidpy 2.0 releaseEverything releated to a Squidpy 2.0 release

Status: Open.

#1146 In scverse/squidpy;

· selmanozleyen opened on Apr 2, 2026

We shouldn't use assert_adata_equal

Status: Open.

#1143 In scverse/squidpy;

· selmanozleyen opened on Mar 16, 2026

Control verbosity, like Scanpy

Status: Open.

#1141 In scverse/squidpy;

· alam-shahul opened on Mar 12, 2026

replace manual variable checks with wrapper functions across codebase

Status: Open.

#1137 In scverse/squidpy;

· timtreis opened on Mar 3, 2026

rename functions in private modules to not have underscore for better IDE detection

Status: Open.

#1136 In scverse/squidpy;

· timtreis opened on Mar 3, 2026

ligrec does seed + worker_id antipattern

Status: Open.

#1131 In scverse/squidpy;

· selmanozleyen opened on Mar 2, 2026

Integration Testing CI Test Failure on python 3.12

Status: Open.

#1128 In scverse/squidpy;

· scverse-bot opened on Feb 25, 2026

Integration Testing CI Test Failure on python 3.13 with prerelease dependencies

Status: Open.

#1127 In scverse/squidpy;

· scverse-bot opened on Feb 25, 2026

parallelize progress bar causes zombie processes and deadlocks

Status: Open.

#1123 In scverse/squidpy;

· selmanozleyen opened on Feb 23, 2026

pkg_resources not founded (deprecated since python 3.12)

Status: Open.

#1115 In scverse/squidpy;

· Reovirus opened on Feb 9, 2026