Skip to content

docs: add inline example plot to sc.pl.pca_variance_ratio#4056

Open
Ekin-Kahraman wants to merge 1 commit intoscverse:mainfrom
Ekin-Kahraman:docs/inline-plot-pca-variance
Open

docs: add inline example plot to sc.pl.pca_variance_ratio#4056
Ekin-Kahraman wants to merge 1 commit intoscverse:mainfrom
Ekin-Kahraman:docs/inline-plot-pca-variance

Conversation

@Ekin-Kahraman
Copy link
Copy Markdown
Contributor

Part of #1664. Adds rendered plot examples to sc.pl.pca_variance_ratio showing:

  1. Default variance ratio plot on PBMC 3k
  2. Log-scale variant

Follows the same pattern as #4032 (merged).

Part of scverse#1664. Adds rendered plot examples showing the PCA variance
ratio on PBMC 3k data, including the log scale variant.
@Ekin-Kahraman Ekin-Kahraman mentioned this pull request Apr 11, 2026
56 tasks
@codecov
Copy link
Copy Markdown

codecov bot commented Apr 11, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 78.11%. Comparing base (1f9b5ca) to head (3b82349).
✅ All tests successful. No failed tests found.

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #4056      +/-   ##
==========================================
- Coverage   78.62%   78.11%   -0.51%     
==========================================
  Files         117      117              
  Lines       12727    12727              
==========================================
- Hits        10006     9942      -64     
- Misses       2721     2785      +64     
Flag Coverage Δ
hatch-test.low-vers 77.92% <ø> (ø)
hatch-test.pre 67.84% <ø> (-10.66%) ⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines Coverage Δ
src/scanpy/plotting/_tools/__init__.py 76.17% <ø> (ø)

... and 2 files with indirect coverage changes

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant