ci: write zarr 3 format with supported anndata versions

[flying-sheep]

• Closes Integration Testing CI Test Failure on python 3.13 with prerelease dependencies #3957
• Tests included or not required because:

• Release notes not necessary because: CI

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 78.26%. Comparing base (e2cd66e) to head (2553102).
⚠️ Report is 1 commits behind head on main.
✅ All tests successful. No failed tests found.

Additional details and impacted files

@@           Coverage Diff           @@
##             main    #3959   +/-   ##
=======================================
  Coverage   78.26%   78.26%           
=======================================
  Files         117      117           
  Lines       12633    12633           
=======================================
  Hits         9887     9887           
  Misses       2746     2746           

Flag	Coverage Δ
hatch-test.low-vers	77.59% <ø> (ø)
hatch-test.pre	77.22% <ø> (ø)

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