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  1. samtools samtools Public

    Tools (written in C using htslib) for manipulating next-generation sequencing data

    C 1.9k 607

  2. htslib htslib Public

    C library for high-throughput sequencing data formats

    C 913 459

  3. bcftools bcftools Public

    This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

    C 855 267

  4. hts-specs hts-specs Public

    Specifications of SAM/BAM and related high-throughput sequencing file formats

    TeX 702 179

  5. htsjdk htsjdk Public

    A Java API for high-throughput sequencing data (HTS) formats.

    Java 297 242

  6. tabix tabix Public archive

    Note: tabix and bgzip binaries are now part of the HTSlib project.

    C 90 38

Repositories

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  • bcftools Public

    This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

    samtools/bcftools’s past year of commit activity
    C 855 267 332 12 Updated Apr 3, 2026
  • htsjdk Public

    A Java API for high-throughput sequencing data (HTS) formats.

    samtools/htsjdk’s past year of commit activity
    Java 297 242 277 50 Updated Apr 2, 2026
  • central-9643 Public

    Temporary repository to enable verification with Sonatype Central team

    samtools/central-9643’s past year of commit activity
    0 0 0 0 Updated Apr 2, 2026
  • htslib Public

    C library for high-throughput sequencing data formats

    samtools/htslib’s past year of commit activity
    C 913 459 138 25 Updated Apr 2, 2026
  • samtools Public

    Tools (written in C using htslib) for manipulating next-generation sequencing data

    samtools/samtools’s past year of commit activity
    C 1,869 607 177 21 Updated Mar 26, 2026
  • samtools/www.htslib.org’s past year of commit activity
    HTML 8 13 3 0 Updated Mar 18, 2026
  • hts-specs Public

    Specifications of SAM/BAM and related high-throughput sequencing file formats

    samtools/hts-specs’s past year of commit activity
    TeX 702 179 187 35 Updated Mar 17, 2026
  • c-maint Public

    Maintenance scripts used with the htslib/samtools/bcftools repositories

    samtools/c-maint’s past year of commit activity
    Perl 3 3 0 1 Updated Mar 13, 2026
  • htscodecs Public

    Custom compression for CRAM and others.

    samtools/htscodecs’s past year of commit activity
    C 37 19 0 0 Updated Mar 11, 2026
  • htslib-crypt4gh Public

    HTSlib crypt4gh plug-in

    samtools/htslib-crypt4gh’s past year of commit activity
    C 3 2 1 0 Updated Sep 22, 2023

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