py-rcsb_workflow

Introduction

RCSB Python workflow entry points for data processing and ETL/ELT operations.

Installation

Download the library source software from the project repository:

git clone  --recurse-submodules https://github.com/rcsb/py-rcsb_workflow.git

# or to make sure the submodules are updated --
git submodule update --recursive --init
git submodule update --recursive --remote

Optionally, run test suite (Python versions >= 3.9) using tox:

tox

Installation is via the program pip.

pip install rcsb.workflow --extra-index-url https://pypi.anaconda.org/OpenEye/simple

To run tests from the source tree, the package must be installed in editable mode (i.e. -e):

pip install -e . --extra-index-url https://pypi.anaconda.org/OpenEye/simple

# or using uv

uv pip install -e .