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Version 0.12.0

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@dan-blanchard dan-blanchard released this 13 Dec 20:12
· 117 commits to master since this release
v0.12.0
47340a1

This release mostly features greatly improved reliability of stalled job detection, but also includes some refactoring. Here's the complete list:

  • Modified CPU load calculations used to determine if a job is stalled now included all of the children of a process. Before, if a parent process was sleeping and children were doing all the work, the job would get incorrectly detected as stalled and be resubmitted. This was particularly problematic for SKLL.
  • CPU usage and memory histories are now reset when a job is resubmitted. This means error emails will contain more sensible graphs for resubmitted jobs.
  • Now raise a JobException if we give up on a job instead of ending up in a bad state.
  • Renamed SEND_ERROR_MAILS environment variable to SEND_ERROR_MAIL.
  • Removed deprecated pg_map function. It was replaced by grid_map in 0.9.2
  • Removed runner module from generated API documentation, because no one should really need to use it directly.
  • Renamed Job.job_id to Job.id
  • Added missing local option to grid_map.
  • Added a bunch more unit tests.
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