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@transmart TranSMART Project

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    39 repositories

    • transmart-base-ui

      Public
      Boilerplate code for tranSMART UI
      JavaScript
      •3•0•0•0•Updated Jul 15, 2020Jul 15, 2020

    • SmartR

      Public
      SmartR
      JavaScript
      •
      Apache License 2.0
      •15•13•0•0•Updated Dec 12, 2019Dec 12, 2019

    • transmartApp

      Public
      tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlations between genetic and…
      JavaScript
      •
      GNU General Public License v3.0
      •74•71•1•0•Updated Jul 20, 2018Jul 20, 2018

    • transmart-data

      Public
      Tools for managing tranSMART's database
      PLSQL
      •
      GNU General Public License v3.0
      •46•3•0•1•Updated Jun 7, 2018Jun 7, 2018

    • transmart-test

      Public
      Functional tests for tranSMART
      Groovy
      •4•1•0•0•Updated May 2, 2018May 2, 2018

    • transmart-core-db

      Public
      TranSMART Core
      Groovy
      •
      GNU General Public License v3.0
      •30•1•0•2•Updated Mar 12, 2018Mar 12, 2018

    • blend4j-plugin

      Public
      blend4j-plugin is a grails plugin to access galaxy.
      Groovy
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Mar 12, 2018Mar 12, 2018

    • Rmodules

      Public
      A R statistical analysis module plugin for tranSMART
      Groovy
      •
      Other
      •34•5•0•0•Updated Mar 12, 2018Mar 12, 2018

    • transmart-xnat-viewer

      Public
      Connector to link tranSMART to an XNAT server
      Groovy
      •6•0•0•0•Updated Mar 12, 2018Mar 12, 2018

    • transmart-xnat-importer-plugin

      Public
      Groovy
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Mar 12, 2018Mar 12, 2018

    • transmart-rest-api

      Public
      HTTP available tranSMART RESTful API
      Groovy
      •
      Other
      •11•3•0•1•Updated Mar 12, 2018Mar 12, 2018

    • dalliance-plugin

      Public
      JavaScript
      •4•0•0•0•Updated Mar 12, 2018Mar 12, 2018

    • transmart-mydas

      Public
      Java
      •5•0•0•0•Updated Mar 12, 2018Mar 12, 2018

    • transmart-metacore-plugin

      Public
      The tranSMART plugin Metacore
      Groovy
      •6•0•0•0•Updated Mar 12, 2018Mar 12, 2018

    • transmart-gwas-plink

      Public
      Plink integration for tranSMART
      Groovy
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Mar 12, 2018Mar 12, 2018

    • transmart-legacy-db

      Public
      Contains the Grails domain declarations of the legacy transmart schema
      Groovy
      •
      GNU General Public License v2.0
      •6•0•0•0•Updated Mar 12, 2018Mar 12, 2018

    • transmart-extensions

      Public
      Elements that are being collected for refactoring but do not yet have a home. This project needs to be reviewed often!
      Java
      •10•1•0•0•Updated Mar 12, 2018Mar 12, 2018

    • folder-management-plugin

      Public
      The transmart (and grails) plugin that contains the folder-management elements.
      Groovy
      •17•0•0•0•Updated Mar 12, 2018Mar 12, 2018

    • tranSMART-ETL

      Public
      tranSMART ETL pipelines and configurations
      Groovy
      •26•11•0•0•Updated Mar 12, 2018Mar 12, 2018

    • Scripts

      Public
      A collection of scripts for managing all the tranSMART Foundation repositories
      Shell
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Feb 19, 2018Feb 19, 2018

    • transmart-gwas-plugin

      Public
      The transmart (and grails) plugin that contains the GWAS elements.
      PLSQL
      •14•0•0•0•Updated Jan 17, 2018Jan 17, 2018

    • transmart-core-api

      Public
      constraints
      Groovy
      •
      GNU General Public License v3.0
      •15•1•0•0•Updated Jan 17, 2018Jan 17, 2018

    • RInterface

      Public
      A R module with packaged functions to query the tranSMART database directly
      R
      •
      Other
      •9•4•1•1•Updated Oct 12, 2017Oct 12, 2017

    • IpaApi

      Public
      Java
      •
      Apache License 2.0
      •2•0•0•0•Updated Dec 7, 2016Dec 7, 2016

    • GWAVA

      Public
      Genome Wide Association Study Visualizer (from Pfizer)
      HTML
      •2•0•0•0•Updated Oct 18, 2016Oct 18, 2016

    • mydas

      Public
      mydas is an easy-to-extend Java DAS server framework.
      Java
      •2•0•0•0•Updated Oct 17, 2016Oct 17, 2016

    • transmart-ICE

      Public
      ICE tool for transmart ETL (formerly FCL4tranSMART)
      Java
      •1•1•0•0•Updated Jul 19, 2016Jul 19, 2016

    • transmart-batch

      Public
      tranSMART pipeline alternative to ETL, using Spring Batch
      Groovy
      •14•0•0•0•Updated Jul 19, 2016Jul 19, 2016

    • transmart-horde

      Public
      This contains code for a prototype of "federation"
      Groovy
      •0•0•0•0•Updated Jun 27, 2016Jun 27, 2016

    • transmartApp-Config

      Public
      external configuration files for tranSMART application
      Groovy
      •3•4•1•0•Updated May 26, 2016May 26, 2016