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    • fsl-feat

      Public archive
      FEAT is a software tool for high quality model-based FMRI data analysis
      Dockerfile
      3000Updated Feb 2, 2026Feb 2, 2026
    • fsl-anat

      Public archive
      A Flywheel gear for running FSL's Processing Script: fsl_anat
      Python
      1000Updated Feb 2, 2026Feb 2, 2026
    • fsl-fslreorient2std

      Public archive
      Python
      0101Updated Feb 2, 2026Feb 2, 2026
    • fsl-sienax

      Public archive
      A Flywheel gear for running FSL's SIENAX
      Dockerfile
      0000Updated Feb 2, 2026Feb 2, 2026
    • fsl-topup

      Public archive
      Flywheel Gear to execute TopUp from FSL
      Python
      3301Updated Feb 2, 2026Feb 2, 2026
    • nobrainer-gear

      Public archive
      This gear wraps nobrainer for prediction on 3D imaging
      Python
      0000Updated Feb 2, 2026Feb 2, 2026
    • ROI_export

      Public archive
      Exports ROIs as csv
      Python
      0100Updated Feb 2, 2026Feb 2, 2026
    • philips_to_ismrmrd

      Public archive
      Philips to ISMRMRD converter
      XSLT
      0000Updated Feb 2, 2026Feb 2, 2026
    • siemens_to_ismrmrd

      Public archive
      Siemens to ISMRMRD converter
      Shell
      0100Updated Feb 2, 2026Feb 2, 2026
    • fsl-siena-sienax

      Public archive
      Shell
      0000Updated Feb 2, 2026Feb 2, 2026
    • bids-freesurfer

      Public archive
      Gear that runs freesurfer on BIDS-curated data
      Python
      1010Updated Feb 2, 2026Feb 2, 2026
    • eeg-classifier

      Public archive
      Classification tool for EEG data
      Python
      0000Updated Sep 8, 2025Sep 8, 2025
    • ptd_header_parser

      Public archive
      Parses header information from *.ptd files and saves the outputs as JSON
      Python
      0000Updated Sep 8, 2025Sep 8, 2025
    • csv-import

      Public archive
      Parse a CSV and place CSV info into Subject info using the Python SDK
      Python
      1001Updated Sep 8, 2025Sep 8, 2025
    • mri-deface

      Public archive
      This gear uses the mri_deface tool from Free Surfer to deface an MRI image.
      Shell
      0311Updated Sep 8, 2025Sep 8, 2025
    • pydeface-gear

      Public archive
      A flywheel gear to remove facial structure from MRI images.
      Python
      0100Updated Sep 8, 2025Sep 8, 2025
    • DICOM-to-MIPS

      Public archive
      Generates MIP png images, given a DICOM archive
      Shell
      0100Updated Sep 8, 2025Sep 8, 2025
    • fsl-fslhd

      Public archive
      Python
      0000Updated Sep 8, 2025Sep 8, 2025
    • Python
      1001Updated Sep 8, 2025Sep 8, 2025
    • repositories for the gear building tutorial
      Python
      2110Updated Sep 8, 2025Sep 8, 2025
    • redcap

      Public archive
      Python
      1000Updated Sep 8, 2025Sep 8, 2025
    • hcp-func

      Public archive
      Python
      0000Updated Sep 8, 2025Sep 8, 2025
    • hcp-icafix

      Public archive
      HCP ICAFIX pipeline
      Shell
      2121Updated Sep 8, 2025Sep 8, 2025
    • hcp-struct

      Public archive
      Python
      0010Updated Sep 8, 2025Sep 8, 2025
    • freesurfer-recon-all

      Public archive
      Gear that runs FreeSurfer v7.2.0 Release (July 19, 2021)
      Shell
      3302Updated Sep 8, 2025Sep 8, 2025
    • extract-cmrr-physio

      Public archive
      Extract physiological log files from encoded "_PHYSIO" DICOM file generated by CMRR MB sequences (>=R015, >=VD13A)
      Python
      0020Updated Sep 8, 2025Sep 8, 2025
    • dicom-mr-classifier

      Public archive
      Python
      4001Updated Sep 8, 2025Sep 8, 2025
    • deid_fork

      Public archive
      best effort anonymization for medical images using python
      Python
      55000Updated May 29, 2025May 29, 2025
    • mriqc

      Public archive
      No-reference image quality metrics for quality assessment of MRI
      Shell
      4100Updated Jul 9, 2024Jul 9, 2024
    • fsl-base

      Public
      Build contexts for base images containing various FSL versions
      Python
      0000Updated Apr 25, 2024Apr 25, 2024