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    • Repository of the paper: "Histo-Miner: Tissue Features Extraction With Deep Learning from H&E Images of Squamous Cell Carcinoma Skin Cancer"
      Python
      21900Updated Feb 5, 2026Feb 5, 2026
    • DISK

      Public
      Deep Imputation for Skeleton data
      Python
      52610Updated Feb 5, 2026Feb 5, 2026
    • actitect

      Public
      Repository for ActiTect (general-purpose actigraphy analysis) and RBDisco (RBD prediction from wrist actigraphy).
      Python
      0400Updated Feb 3, 2026Feb 3, 2026
    • lunaphore

      Public
      Scripts for the segmentation and analysis of images from the Sos lab
      Jupyter Notebook
      0000Updated Dec 14, 2025Dec 14, 2025
    • 0010Updated Dec 8, 2025Dec 8, 2025
    • amap-app

      Public
      AMAP-APP is a desktop application that leverages deep learning to performs segmentation and morphometry quantification of fluorescent microscopy images of podoc…
      Python
      1600Updated Oct 27, 2025Oct 27, 2025
    • Additional scripts to reproduce analyses from the DISK paper.
      HTML
      0000Updated Sep 26, 2025Sep 26, 2025
    • dearrayer

      Public
      Python tool for semi-automatic extracting cores from tissue microarrays
      Python
      0300Updated Aug 8, 2025Aug 8, 2025
    • ecmstat

      Public
      Python
      0000Updated Jul 7, 2025Jul 7, 2025
    • 0000Updated Apr 29, 2025Apr 29, 2025
    • Repository for Unsupervised Representation Learning of C. elegans Poses and Behavior Sequences From Microscope Video Recordings.
      Python
      0000Updated Apr 28, 2025Apr 28, 2025
    • PIPNet

      Public
      PIP-Net: Patch-based Intuitive Prototypes Network for Interpretable Image Classification (CVPR 2023)
      Python
      33000Updated Mar 4, 2025Mar 4, 2025
    • Python
      0000Updated Nov 5, 2024Nov 5, 2024
    • ProtoPool

      Public
      Code for "Interpretable image classification with differentiable prototypes assignment", ECCV 2022
      Python
      6000Updated Oct 4, 2024Oct 4, 2024
    • lmagp

      Public
      Repository of the paper "Language models are good pathologists: using attention-based sequence reduction and text-pretrained transformers for efficient WSI clas…
      Python
      1800Updated Sep 10, 2024Sep 10, 2024
    • mcm

      Public
      0000Updated Aug 21, 2024Aug 21, 2024
    • gbm-seg

      Public
      Python
      1000Updated Aug 12, 2024Aug 12, 2024
    • Code accompanying PDiscoNet: Semantically consistent part discovery for fine-grained recognition
      Python
      3000Updated Aug 11, 2024Aug 11, 2024
    • Official implementation for the paper "Deep ViT Features as Dense Visual Descriptors".
      Python
      59000Updated Jul 1, 2024Jul 1, 2024
    • CellViT: Vision Transformers for Precise Cell Segmentation and Classification
      Python
      63000Updated Jun 17, 2024Jun 17, 2024
    • CellViT

      Public
      CellViT: Vision Transformers for Precise Cell Segmentation and Classification
      Python
      63000Updated Jun 3, 2024Jun 3, 2024
    • GlomNet

      Public
      GlomNet: A HoVer Deep Learning Model for Glomerulus Instance Segmentation
      Python
      1110Updated May 30, 2024May 30, 2024
    • CLTR

      Public
      [ECCV 2022] An End-to-End Transformer Model for Crowd Localization
      Python
      11000Updated May 29, 2024May 29, 2024
    • [CVPR2023] This is an official implementation of paper "DETRs with Hybrid Matching".
      Python
      32000Updated May 27, 2024May 27, 2024
    • ProtoMIL

      Public
      Jupyter Notebook
      142000Updated May 24, 2024May 24, 2024
    • PyTorch code for Vision Transformers training with the Self-Supervised learning method DINO
      Python
      1k000Updated May 11, 2024May 11, 2024
    • Preprocessing steps for Whole Slide Images, with Multiple Instance Learning problems in mind.
      Python
      0300Updated Mar 15, 2024Mar 15, 2024
    • Code for paper "Unleashing the Power of Prompt-driven Nucleus Instance Segmentation"
      Python
      7001Updated Mar 12, 2024Mar 12, 2024
    • Python
      6000Updated Mar 1, 2024Mar 1, 2024
    • adios

      Public
      Shell
      6000Updated Feb 21, 2024Feb 21, 2024