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    238 repositories

    • dnf2

      Public
      DNFv2 is the sequel to DNF using the tools from InteGrAO
      Jupyter Notebook
      •0•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • MedSAM2-RECIST

      Public
      Docker-based MedSAM2 inference pipeline for MICCAI FLARE25 Task1-PancancerRECIST-to-3D
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • bhklab-nninteractive

      Public
      bhklab-nnInteractive is a project which tests the nnInteractive medical image segmentation model using RECIST and RERECIST input prompts and evaluates its perfo…
      Jupyter Notebook
      •0•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • bhklab-BiomedParse

      Public
      BiomedParse: A Foundation Model for Joint Segmentation, Detection, and Recognition of Biomedical Objects Across Nine Modalities
      Python
      •
      Apache License 2.0
      •95•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • med-imagetools

      Public
      Transparent and reproducible medical image processing pipelines in Python.
      pythonmachine-learningdeep-learningdicomtorchpytorchmedicalnrrdnifti
      Python
      •
      MIT License
      •10•56•29•4•Updated Jan 29, 2026Jan 29, 2026

    • Science-portal

      Public
      TypeScript
      •0•0•3•0•Updated Jan 28, 2026Jan 28, 2026

    • lab-website-data-refresh

      Public
      Repository containing scripts that merge data from external sources into our databases
      Python
      •0•0•0•0•Updated Jan 28, 2026Jan 28, 2026

    • bhklab-website

      Public
      BHK Lab website
      JavaScript
      •0•0•6•0•Updated Jan 27, 2026Jan 27, 2026

    • PredictIO_Nextflow

      Public
      Nextflow pipeline for pan-cancer immunotherapy biomarker discovery using transcriptomic data
      Nextflow
      •0•0•0•0•Updated Jan 23, 2026Jan 23, 2026

    • science-portal-mailing

      Public
      Python
      •1•0•2•1•Updated Jan 22, 2026Jan 22, 2026

    • conformal-ffs

      Public
      Feature selection to find an optimal subset of features
      Jupyter Notebook
      •0•0•0•1•Updated Jan 21, 2026Jan 21, 2026

    • aaura-bench-preprocess

      Public
      Preprocessing of datasets for use in the AAuRA Benchmarking tool.
      Jupyter Notebook
      •0•0•0•1•Updated Jan 12, 2026Jan 12, 2026

    • aircheck-sgc-taget2035

      Public
      Aircheck is a platform for high quality and structured data to enable the prediction of small molecules interactions with proteins using AI/ML.
      Jupyter Notebook
      •0•0•0•0•Updated Jan 12, 2026Jan 12, 2026

    • recist-vs-reality

      Public
      Development of the AI-Augmented Response Assessment
      Jupyter Notebook
      •0•0•0•2•Updated Jan 7, 2026Jan 7, 2026

    • handbook

      Public
      Lab Handbook For BHKLab
      0•4•42•9•Updated Jan 6, 2026Jan 6, 2026

    • ORCESTRA

      Public
      ORCESTRA is a new web application that enables users to search, request and manage pharmacogenomic datasets (PSets).
      JavaScript
      •
      Apache License 2.0
      •2•5•29•8•Updated Dec 30, 2025Dec 30, 2025

    • hdd-data-pipeline

      Public
      Pipeline to create the Harmonized Drug Dataset (HDD)
      HTML
      •0•0•1•1•Updated Dec 24, 2025Dec 24, 2025

    • circRNA-detection

      Public
      R
      •0•0•0•0•Updated Dec 18, 2025Dec 18, 2025

    • damply

      Public
      Data Management Plan made simple
      Python
      •0•0•3•1•Updated Dec 17, 2025Dec 17, 2025

    • medsam2-inference

      Public
      Python
      •0•0•2•1•Updated Dec 12, 2025Dec 12, 2025

    • deep-drug-network-fusion

      Public
      DNF2
      JavaScript
      •0•0•0•0•Updated Dec 11, 2025Dec 11, 2025

    • xevadb-project

      Public
      XevaDB project is a host for resources and code for xevadb paper
      Jupyter Notebook
      •0•0•0•0•Updated Dec 9, 2025Dec 9, 2025

    • annotationdb-api

      Public
      API for interfacing with AnnotationDB
      Python
      •0•0•1•0•Updated Dec 8, 2025Dec 8, 2025

    • annotationdb-seeding

      Public
      Repository for creating and populating MySQL tables for AnnotationDB using SQLAlchemy
      R
      •0•0•2•0•Updated Dec 5, 2025Dec 5, 2025

    • ispy2-r2r

      Public
      Running READII-2-ROQC on ISPY2
      HTML
      •0•0•32•1•Updated Dec 5, 2025Dec 5, 2025

    • retiring-the-ruler

      Public
      Simulation code accompanying the Retiring the Ruler: Toward a Volumetric, Multi-Lesion, Longitudinal Lens on Tumor Response paper.
      Python
      •0•0•0•1•Updated Dec 5, 2025Dec 5, 2025

    • orcestra-new-api

      Public
      Python
      •1•0•10•0•Updated Dec 1, 2025Dec 1, 2025

    • CT-Radiogenomics

      Public
      Radiogenomics project
      R
      •1•0•0•0•Updated Nov 28, 2025Nov 28, 2025

    • sarc-pgx-biomarker

      Public
      Biomarker Discovery in Soft Tissue Sarcoma Using Pharmacogenomics Data
      R
      •0•0•0•0•Updated Nov 28, 2025Nov 28, 2025

    • bhklab-project-template

      Public
      Setup FAIR and DMP compliant projects with one command
      templatepixifair
      Python
      •
      MIT License
      •0•2•5•1•Updated Nov 28, 2025Nov 28, 2025