Repositories list

• fasta-checksum-utils

  Public
  Command-line utility and async Python library for checksumming FASTA files and individual contigs.

  Python

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Feb 4, 2026Feb 4, 2026

• katsu

  Public
  Phenopackets-based metadata service for the Bento platform. Docs: https://metadata-service.readthedocs.io

  clinical-dataphenopacketsphenotypic-data

  Python

  •

  GNU Lesser General Public License v3.0

  •6•5•0•9•Updated Feb 3, 2026Feb 3, 2026

• bento_lib

  Public
  Shared Python resources for Bento platform microservices.

  Python

  •

  GNU Lesser General Public License v3.0

  •0•2•9•6•Updated Feb 3, 2026Feb 3, 2026

• bento

  Public
  The official Bento distribution - orchestration and deployment infrastructure for the Bento platform.

  Python

  •

  GNU Lesser General Public License v3.0

  •3•11•0•10•Updated Feb 3, 2026Feb 3, 2026

• bento_public

  Public
  A publicly accessible portal for clinical datasets, where users are able to see high-level statistics of the data available through predefined variables of inte…

  TypeScript

  •

  GNU Lesser General Public License v3.0

  •2•1•0•11•Updated Feb 3, 2026Feb 3, 2026

• bento_web

  Public
  React-based data discovery and management portal for the Bento platform.

  reactchord

  JavaScript

  •

  GNU Lesser General Public License v3.0

  •3•0•25•4•Updated Feb 3, 2026Feb 3, 2026

• bento_charts

  Public
  Recharts wrapper for use in Bento platform front-ends

  TypeScript

  •

  MIT License

  •0•0•1•1•Updated Jan 30, 2026Jan 30, 2026

• bento_demo_dataset

  Public
  Partially synthetic demo dataset for Bento.

  datasetbento

  Python

  •

  GNU Lesser General Public License v3.0

  •0•0•0•1•Updated Jan 30, 2026Jan 30, 2026

• bento_wes

  Public
  Workflow execution service (based on GA4GH WES schemas) for the Bento platform.

  flaskworkflowga4gh+ 1chord

  Python

  •

  GNU Lesser General Public License v3.0

  •0•0•1•1•Updated Jan 29, 2026Jan 29, 2026

• bento_notification_service

  Public
  Notification service for the Bento platform.

  Python

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Jan 29, 2026Jan 29, 2026

• bento_authorization_service

  Public
  Permissions and authorization service for the Bento platform.

  Python

  •

  GNU Lesser General Public License v3.0

  •0•0•0•1•Updated Jan 29, 2026Jan 29, 2026

• bento_beacon

  Public
  GA4GH Beacon v2 microservice for the Bento platform

  Python

  •0•0•0•3•Updated Jan 29, 2026Jan 29, 2026

• bento_reference_service

  Public
  Reference data (genomes & annotations) service for the Bento platform.

  Python

  •

  GNU Lesser General Public License v3.0

  •0•0•0•1•Updated Jan 28, 2026Jan 28, 2026

• bento_drop_box_service

  Public
  Drop box and basic file management service for the Bento platform.

  Python

  •

  GNU Lesser General Public License v3.0

  •0•0•1•1•Updated Jan 28, 2026Jan 28, 2026

• bento_etl

  Public
  Service for Bento ETL operations

  Python

  •

  GNU General Public License v3.0

  •0•0•0•2•Updated Jan 28, 2026Jan 28, 2026

• bento_keycloak_dist

  Public
  Keycloak Docker image distribution for the Bento platform. This is only relevant if a Bento instance is responsible for running its own IdP.

  Dockerfile

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Jan 28, 2026Jan 28, 2026

• bento_drs

  Public
  Data repository service for the Bento platform, based on GA4GH's DRS specification.

  Python

  •

  GNU Lesser General Public License v3.0

  •1•2•2•1•Updated Jan 27, 2026Jan 27, 2026

• bento_service_registry

  Public
  Microservice implementing the GA4GH Service Registry API for the Bento platform.

  flaskmicroservicega4gh+ 1chord

  Python

  •

  GNU Lesser General Public License v3.0

  •0•2•0•1•Updated Jan 27, 2026Jan 27, 2026

• bento_aggregation_service

  Public
  Asynchronous search result aggregation service for the Bento platform.

  Python

  •

  GNU Lesser General Public License v3.0

  •0•2•12•0•Updated Jan 26, 2026Jan 26, 2026

• gohan

  Public
  Genomic Variants search API, working from the VCF format.

  Go

  •

  GNU Lesser General Public License v3.0

  •0•1•0•2•Updated Jan 14, 2026Jan 14, 2026

• bento_base_images

  Public
  Automated Bento platform base image building.

  Dockerfile

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Jan 14, 2026Jan 14, 2026

• bento-platform.github.io

  Public
  JavaScript

  •

  GNU Lesser General Public License v3.0

  •0•1•0•0•Updated Dec 29, 2025Dec 29, 2025

• bento_gateway

  Public
  OpenResty-based gateway, configuration, & continuous building for inclusion in Bento deployments.

  Smarty

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Dec 17, 2025Dec 17, 2025

• bento_event_relay

  Public
  Socket.IO event relay for the Bento platform.

  JavaScript

  •

  GNU Lesser General Public License v3.0

  •0•0•1•1•Updated Dec 1, 2025Dec 1, 2025

• bento_postgis_dist

  Public
  Cross-platform build of Postgres + PostGIS for use with the Bento Katsu service.

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Nov 26, 2025Nov 26, 2025

• bento-file-display

  Public
  TypeScript component for displaying files in Bento front-ends.

  TypeScript

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Nov 20, 2025Nov 20, 2025

• takuan

  Public
  An API for ingesting, organizing and querying data from transcriptomics experiments.

  Python

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Nov 5, 2025Nov 5, 2025

• bento_build_action

  Public
  GitHub CI composite action to build development and production containers for Bento components.

  0•0•0•0•Updated Oct 6, 2025Oct 6, 2025

• bento_auth_js

  Public
  Helper library for Bento frontends to authenticate with an OIDC IdP and authorize requests.

  TypeScript

  •

  MIT License

  •0•0•0•0•Updated Aug 19, 2025Aug 19, 2025

• bento-docs

  Public
  This repository hosts the versioned documentation for the Bento portal deployed to GitHub Pages.

  0•0•0•1•Updated Jul 24, 2025Jul 24, 2025