Repositories list

• bossdb-collab-notebooks

  Public
  Collection of public notebooks for all projects on BossDB

  Jupyter Notebook

  •

  Apache License 2.0

  •0•1•2•0•Updated Feb 7, 2026Feb 7, 2026

• bossypaints

  Public
  Web-based dense annotation tool for connectomics

  Svelte

  •

  Apache License 2.0

  •0•2•8•1•Updated Feb 6, 2026Feb 6, 2026

• BBQS-EMBER-web

  Public
  BBQS EMBER Archive web app

  bbqs-ember

  Vue

  •1•1•9•4•Updated Feb 6, 2026Feb 6, 2026

• v1dd-transfer-scratch

  Public
  Scratch repository for v1dd transfer

  Shell

  •0•0•0•0•Updated Feb 5, 2026Feb 5, 2026

• ember-dandi-access-summaries

  Public
  Summaries of access stats (full downloads & streaming) for each EMBER-Dandiset on the EMBER archive.

  bbqs-ember

  0•0•1•0•Updated Feb 4, 2026Feb 4, 2026

• BBQS-EMBER-Data-Model

  Public
  Core repository for the EMBER ARCHIVE

  bbqs-ember

  Mermaid

  •2•0•1•1•Updated Feb 2, 2026Feb 2, 2026

• dandi-archive

  Public
  EMBER - DANDI API server and Web app

  bbqs-ember

  Python

  •

  Apache License 2.0

  •18•2•8•0•Updated Jan 22, 2026Jan 22, 2026

• dandi-infrastructure

  Public
  A repository to collect docs/issues on DANDI project infrastructure for Ember

  bbqs-ember

  HCL

  •

  Apache License 2.0

  •8•0•7•0•Updated Jan 22, 2026Jan 22, 2026

• colocar

  Public
  tools for sparse human annotation of three-dimensional [neuroscience] datasets

  neuroscienceweb-applicationground-truth+ 3bossdbjhuaplsparse-annotations

  JavaScript

  •0•4•2•47•Updated Jan 22, 2026Jan 22, 2026

• open-data-registry

  Public
  A registry of publicly available datasets on AWS

  Python

  •

  Apache License 2.0

  •1.1k•0•0•0•Updated Jan 20, 2026Jan 20, 2026

• Motif-Discovery

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 19, 2026Jan 19, 2026

• bossdb_cookbook

  Public
  The BossDB Cookbook is a collection of introductory notebooks and examples for interfacing with the BossDB system.

  Jupyter Notebook

  •0•5•1•1•Updated Jan 16, 2026Jan 16, 2026

• BBQS-EMBER-cookbook

  Public
  BBQS EMBER Cookbook

  bbqs-ember

  0•0•0•0•Updated Jan 16, 2026Jan 16, 2026

• dotmotif

  Public
  A performant, powerful query framework to search for network motifs

  pythonneo4jgraph+ 13networkxgraph-databaseconnectomicsquery-languageconnectomemotif-discoverygraph-matching+ 6

  Python

  •

  Apache License 2.0

  •10•89•2•0•Updated Jan 8, 2026Jan 8, 2026

• cloud-files

  Public
  Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •10•0•0•0•Updated Jan 7, 2026Jan 7, 2026

• BENCHMARK-Metadata

  Public
  Metadata specification and upload instructions for BossDB images, experiments, and annotations

  1•2•5•2•Updated Dec 29, 2025Dec 29, 2025

• neuvue-queue

  Public
  TypeScript

  •

  Apache License 2.0

  •0•1•6•1•Updated Dec 24, 2025Dec 24, 2025

• precomputed-rs

  Public
  Rust

  •

  Apache License 2.0

  •0•0•1•0•Updated Dec 9, 2025Dec 9, 2025

• grand-cypher

  Public
  Implementation of the Cypher language for searching NetworkX graphs

  pythonneo4jgraph+ 5networkxgraph-databasenetworkscyphergrand

  Python

  •

  Apache License 2.0

  •15•125•20•3•Updated Dec 6, 2025Dec 6, 2025

• neuvue-app

  Public
  MICrONS Proofreading App

  JavaScript

  •

  Apache License 2.0

  •2•1•14•1•Updated Nov 24, 2025Nov 24, 2025

• npyjs

  Public
  Read numpy .npy files in JavaScript

  nodejsjavascriptnumpy+ 43dnpyjhuaplnpy-files

  TypeScript

  •

  Apache License 2.0

  •22•94•6•0•Updated Nov 20, 2025Nov 20, 2025

• dandi-docs

  Public
  EMBER-DANDI Documentation

  18•0•4•3•Updated Oct 21, 2025Oct 21, 2025

• motifstudio

  Public
  motifssubgraph-isomorphismbossdb+ 2grand-graphsgrandiso

  TypeScript

  •

  Apache License 2.0

  •0•1•2•0•Updated Oct 14, 2025Oct 14, 2025

• ffn

  Public
  Flood-Filling Networks for instance segmentation in 3d volumes.

  Python

  •

  Apache License 2.0

  •100•0•0•0•Updated Sep 26, 2025Sep 26, 2025

• neuvue-client

  Public
  python client for neuvue-queue

  Python

  •

  Apache License 2.0

  •1•3•0•0•Updated Jul 28, 2025Jul 28, 2025

• motifstudio_client

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Jun 27, 2025Jun 27, 2025

• neuprint-cm

  Public
  Dockerfile

  •1•0•0•0•Updated Jun 17, 2025Jun 17, 2025

• neuPrintHTTP

  Public
  Implements connectomics REST interface

  Go

  •2•0•0•0•Updated Jun 17, 2025Jun 17, 2025

• bossdb-rag-chatbot

  Public
  A Language Interface to the BossDB Ecosystem

  Python

  •

  Apache License 2.0

  •0•1•5•3•Updated Jun 17, 2025Jun 17, 2025

• bossVR

  Public
  Syglass + BossDB

  Python

  •

  Apache License 2.0

  •2•1•0•0•Updated Jun 2, 2025Jun 2, 2025