Repositories list

• pwiz-ai

  Public
  AI tooling and documentation for ProteoWizard/Skyline development

  Python

  •0•0•0•0•Updated Feb 4, 2026Feb 4, 2026

• pwiz

  Public
  The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.

  C#

  •

  Apache License 2.0

  •112•295•99•24•Updated Feb 4, 2026Feb 4, 2026

• container

  Public
  Options for running ProteoWizard applications via containers (e.g. Docker)

  Dockerfile

  •

  Apache License 2.0

  •8•12•6•0•Updated Jul 2, 2025Jul 2, 2025

• web

  Public
  ProteoWizard website

  HTML

  •

  Other

  •1•1•0•0•Updated Jun 1, 2025Jun 1, 2025

• DocumentConverter

  Public
  Fork of mammoth.js to convert Skyline docx documents to HTML

  JavaScript

  •

  BSD 2-Clause "Simplified" License

  •645•0•0•0•Updated May 8, 2025May 8, 2025

• BullseyeSharp

  Public
  some customization for Skyline use, hopefully will contribute back to mhoopman eventually

  C#

  •

  Apache License 2.0

  •1•0•0•0•Updated Jul 10, 2024Jul 10, 2024

• hardklor

  Public
  some customization for Skyline use, hopefully will contribute back to mhoopman eventually

  C++

  •3•0•0•0•Updated Jul 9, 2024Jul 9, 2024

• mstoolkit

  Public
  a couple of small performance improvements, hopefully will contribute back to mhoopman eventually

  C

  •13•1•0•0•Updated Dec 13, 2023Dec 13, 2023

• AlwaysUpRunner

  Public
  Batchfile

  •

  Apache License 2.0

  •0•0•0•0•Updated Jul 11, 2022Jul 11, 2022