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@ProteinEngineering-PESB2 Kren-AI Lab

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    12 repositories

    • Peptipedia

      Public
      TypeScript
      •
      Other
      •1•4•0•0•Updated Oct 7, 2025Oct 7, 2025

    • Peptipedia2.0

      Public archive
      TypeScript
      •
      Other
      •1•7•3•0•Updated Oct 7, 2025Oct 7, 2025

    • data_and_info

      Public
      Repository with public datasets and descriptors generated by our group for benchmarking process
      Python
      •0•1•0•0•Updated Aug 23, 2025Aug 23, 2025

    • amp_class_ml

      Public
      Antimicrobial peptide detection using machine learning approaches
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated Aug 4, 2025Aug 4, 2025

    • training_models_PI

      Public
      A demo project to train predictive models for protein engineering and protein bioinformatic tasks
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated May 22, 2025May 22, 2025

    • plastic_degrading_enzymes

      Public
      Jupyter Notebook
      •
      MIT License
      •1•3•1•0•Updated Feb 12, 2025Feb 12, 2025

    • RUDEUS

      Public
      Developing classification models for DNA-Binding proteins through machine learning and large language models
      machine-learningprotein-sequencesprotein-engineeringdna-binding-proteinsprotein-language-models
      Jupyter Notebook
      •
      MIT License
      •0•4•0•0•Updated Dec 14, 2024Dec 14, 2024

    • Peptitools

      Public
      Peptitools
      TypeScript
      •
      Other
      •0•3•0•0•Updated Dec 8, 2024Dec 8, 2024

    • numerical_representations_protein_seqs

      Public archive
      Exploring digital signal processing combined with physicochemical properties support by NLP techniques
      machine-learningprotein-engineeringnumerical-representation
      Python
      •
      Other
      •1•0•0•0•Updated Nov 28, 2024Nov 28, 2024

    • PeptipediaParser

      Public
      This repository contains reproducible data preprocessing for creating the Peptipedia database.
      Python
      •
      Other
      •0•0•0•0•Updated Aug 23, 2024Aug 23, 2024

    • hydrophobin_class_models

      Public archive
      Developing predictive models for hydrophobin and classification models
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Mar 10, 2024Mar 10, 2024

    • ECNumberClassModels

      Public archive
      Developing machine learning classification models for the functional classifications of the enzyme sequences
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 3, 2023Apr 3, 2023