Search results

vcf_variant_filtering

low priority

Status: Open.

#293 In nf-core/variantbenchmarking;

· georgiakes opened on Mar 13, 2026

wittyer_benchmark

low priority

Status: Open.

#291 In nf-core/variantbenchmarking;

· BarrecaM opened on Mar 12, 2026

svanalyser_benchmark

low priority

Status: Open.

#285 In nf-core/variantbenchmarking;

· sceriff0 opened on Mar 11, 2026

happy_benchmark

low priority

Status: Open.

#284 In nf-core/variantbenchmarking;

· erbatto opened on Mar 11, 2026

vcf_to_csv -> gatk4/variantstotable

enhancementNew feature or requestNew feature or request

low priority

Status: Open.

#280 In nf-core/variantbenchmarking;

· kubranarci opened on Mar 10, 2026

standardize local modules

enhancementNew feature or requestNew feature or request

high priority

Status: Open.

#278 In nf-core/variantbenchmarking;

· kubranarci opened on Feb 27, 2026

Add rtgtools/cnveval

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#266 In nf-core/variantbenchmarking;

· georgiakes opened on Jan 22, 2026

Port local subworkflows to nf-core/modules

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

low priority

Status: Open.

#265 In nf-core/variantbenchmarking;

· georgiakes opened on Jan 22, 2026

Port local modules to nf-core/modules

enhancementNew feature or requestNew feature or request

high priority

Status: Open.

#264 In nf-core/variantbenchmarking;

· georgiakes opened on Jan 22, 2026

Add unit tests and documentation to local modules and subworkflows

enhancementNew feature or requestNew feature or request

high priority

Status: Open.

#257 In nf-core/variantbenchmarking;

· kubranarci opened on Dec 1, 2025

add TP_comp for sompy

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

Status: Open.

#233 In nf-core/variantbenchmarking;

· kubranarci opened on Oct 14, 2025

unexpected F1 score running somatic snv/indel variants benchmarking

bugSomething isn't workingSomething isn't working

Status: Open.

#225 In nf-core/variantbenchmarking;

· gianfilippo opened on Sep 29, 2025