chore(modules): migrate abricate/run to new version output format

[maxcumminsandfred-lab]

Migrated module to use topic channels for version outputs.

Files changed:

• modules/nf-core/abricate/run/main.nf
• modules/nf-core/abricate/run/meta.yml
• modules/nf-core/abricate/run/tests/main.nf.test.snap

Generated by nfcore-migrate-versions skill (ClawHub pending), OpenClaw 2026.2.24.

Manually curated by @maxlcummins

PR checklist

Closes #XXX

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
• If you've added a new tool - have you followed the module conventions in the contribution docs
• If necessary, include test data in your PR.
• Remove all TODO statements.
• Broadcast software version numbers to topic: versions - See version_topics
• Follow the naming conventions.
• Follow the parameters requirements.
• Follow the input/output options guidelines.
• Add a resource label
• Use BioConda and BioContainers if possible to fulfil software requirements.
• Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
  • For modules:
    • nf-core modules test <MODULE> --profile docker
    • nf-core modules test <MODULE> --profile singularity
    • nf-core modules test <MODULE> --profile conda
  • For subworkflows:
    • nf-core subworkflows test <SUBWORKFLOW> --profile docker
    • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
    • nf-core subworkflows test <SUBWORKFLOW> --profile conda