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new module: gatk4/analyzecovariates#10063

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thomasisensee merged 2 commits intonf-core:masterfrom
thomasisensee:analyzecovariates
Mar 2, 2026
Merged

new module: gatk4/analyzecovariates#10063
thomasisensee merged 2 commits intonf-core:masterfrom
thomasisensee:analyzecovariates

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This new module wraps GATK's AnalyzeCovariates, which can: "Evaluate and compare [two or optionally three] base quality score recalibration (BQSR) tables." Output is a pdf for visual comparison of BQSR tables, and the corresponding data within a CSV file from which the pdf was generated.

Closes #10054

  • This comment contains a description of changes (with reason).
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  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • Uses existing test data
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  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
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      • nf-core modules test <MODULE> --profile docker
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@thomasisensee thomasisensee added the new module Adding a new module label Feb 16, 2026
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All looks good to me.

@thomasisensee thomasisensee added this pull request to the merge queue Mar 2, 2026
Merged via the queue into nf-core:master with commit 5a80d76 Mar 2, 2026
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@thomasisensee thomasisensee deleted the analyzecovariates branch March 2, 2026 10:17
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new module: gatk4/analyzecovariates

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