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@hariszaf hariszaf commented Nov 19, 2025

This PR aims at providing microbetag as a Nextflow pipeline.

It brings two main workflows:

  • the precalc.nf that runs the pre-calculations for all the pairwise genome combinations of a genome catalogue
  • the annotate.nf that infers a co-occurrence network, if not provided, and microbetag-annotates it

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