V1.0.0-Mouse

Clean version of RIMA Mouse model

Notable Changes

This version only supports mouse bulk RNA-seq data, and have removed unnecessary modules from the RIMA pipeline.

Thanks to @kateyliu, @Aashna01, @cjwong20, and @Lindky for their contributions to this release!

V1.0.0

A stable version for RIMA publication. This version only supports human bulk RNA seq data. For running mouse data, please go to the RIMA_Mouse.

Notable Changes

Changed the data structure for the cohort analysis
Created environment .yaml files for different platforms (AWS, GCP)
Added meta info to the name of downstream output files

Thanks to @kateyliu, @Aashna01, @jen-dfci, and @Lindky for their contributions to this release!

V1.0.0-Kraken

Initial RIMA version for user on the Kraken.

This version includes the mouse model

Please follow the RIMA-Kraken README.md to select human or mouse references.

Thanks to @kateyliu, @Aashna01, @cjwong20, and @Lindky for their contributions to this release!