CBH-DWIpipe

DWI pipeline for the CBH Rabin lab. Developed by Katie Vandeloo, University of Toronto, Sunnybrook Research Institute

• Table of Contents
• Introduction
• Dependencies
• Installation
• Tutorial

Table of Contents

• Introduction
• Dependencies
• Installation
  • 1. Install prerequisites
  • 2. Configure environment

Introduction

Dependencies

Installation

Tutorial

Open terminal and navigate to your working directory on dimag server:

ssh <yourusername>@dimag.sri.utoronto.ca

1. Conversion of file format from dicom to compressed nifti and organization into BIDS convention