taxqueue

Taxonomy assignment with task queue

Front End

Files consist of main page

• index.html : Main page HTML
• uploader.html : Fine uploader HTML
• js/filetransfer.js : Enqueue file to the queue
• js/injectresults.js : Add result table to the site

Back End

RabbitMQ Message Format

• JSON
• keys:

{	randomfolder, 
	count, 
	taskname, 
	primerseq, 
	checkFwd, 
	checkRev, 
	taxalg, 
	rdpdb, 
	conflevel, 
	trlen, 
	"#"			}

Files touching queue.txt/results.txt

• enqueue.php : (w)/()
• dequeue.php : (r,w)/(w)
• vallidate.php : (r)/(r)
• results.php : (r)/(r)
• deletefolder.php : ()/(w)

queue.txt File format

• tab separated string
• {$taskname} queued

results.txt File format

• tab separated string
• {$taskname} succeeded {$archivePath} succeeded <tab> ID
• {$taskname} failed - {$reason} <tab> ID