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1. PAModelpy PAModelpy Public

   Repository for source code of the PAModelpy package

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2. Opol-GSMM Opol-GSMM Public

   Genome scale metabolic model for Ogataea polymorpha NCYC495.

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3. Tutorial_GEM_and-_FBA Tutorial_GEM_and-_FBA Public

   Tutorial for simulation of constraint based models with CobraPy.

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4. Ustilago_maydis-GEM Ustilago_maydis-GEM Public

   The genome scale metabolic model iUma22 for Ustilago maydis

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5. Exp2Ipynb Exp2Ipynb Public

   Exp2Ipynb is a collection of Python Jupyter Notebooks for the analysis of gene expression. The input is a library of sequences with equal length mapped to associated expression strength.

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6. PathwayToolsAnnotationParser PathwayToolsAnnotationParser Public

   Matlab script that parses files exported from Pathway Tools for common annotations in order to complete models created with the COBRA Toolbox. This script finds those annotations that the COBRA par…

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