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use class Indenter to fix wrong indentation in yaml output #175

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use class Indenter to fix wrong indentation in yaml output #175

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aae4c77
use class Indenter to fix wrong indentation in yaml output
drosofff May 31, 2021
4931268
use dump instead of safe_dump
drosofff May 31, 2021
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7 changes: 6 additions & 1 deletion src/ephemeris/generate_tool_list_from_ga_workflow_files.py
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Original file line number Diff line number Diff line change
Expand Up @@ -78,9 +78,14 @@ def extract_tool_shed_repositories_from_workflow_dict(workflow_dictionary):


def print_yaml_tool_list(tool_dictionary, output_file):
class Indenter(yaml.Dumper):

def increase_indent(self, flow=False, indentless=False):
return super(Indenter, self).increase_indent(flow, False)

with open(output_file, 'w') as F:
F.write("\n".join([INSTALL_TOOL_DEPENDENCIES, INSTALL_REPOSITORY_DEPENDENCIES, INSTALL_RESOLVER_DEPENDENCIES, "", ""]))
F.write(yaml.safe_dump(tool_dictionary, default_flow_style=False))
F.write(yaml.dump(tool_dictionary, Dumper=Indenter, default_flow_style=False))
return


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