epiverse-trace · avallecam · Nov 22, 2025 · Nov 4, 2025
diff --git a/renv/profiles/lesson-requirements/renv.lock b/renv/profiles/lesson-requirements/renv.lock
@@ -321,16 +321,16 @@
       "NeedsCompilation": "yes",
       "Author": "Object-Oriented Programming Working Group [cph], Davis Vaughan [aut], Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>), Tomasz Kalinowski [aut], Will Landau [aut], Michael Lawrence [aut], Martin Maechler [aut] (<https://orcid.org/0000-0002-8685-9910>), Luke Tierney [aut], Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>)",
       "Maintainer": "Hadley Wickham <hadley@posit.co>",
-      "Repository": "https://packagemanager.posit.co/cran/__linux__/jammy/latest"
+      "Repository": "RSPM"
     },
     "V8": {
       "Package": "V8",
-      "Version": "8.0.0",
+      "Version": "8.0.1",
       "Source": "Repository",
       "Type": "Package",
       "Title": "Embedded JavaScript and WebAssembly Engine for R",
       "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"George\", \"Stagg\", role = \"ctb\", comment = c(ORCID = \"0009-0006-3173-9846\")), person(\"Jan Marvin\", \"Garbuszus\", role = \"ctb\"))",
-      "Description": "An R interface to V8 <https://v8.dev>: Google's open source JavaScript and WebAssembly engine. This package can be compiled either with V8 version 6  and up or NodeJS when built as a shared library.",
+      "Description": "An R interface to V8 <https://v8.dev>: Google's open source JavaScript and WebAssembly engine. This package can be compiled either with V8 or NodeJS  when built as a shared library.",
       "License": "MIT + file LICENSE",
       "URL": "https://jeroen.r-universe.dev/V8",
       "BugReports": "https://github.com/jeroen/v8/issues",
@@ -2338,13 +2338,17 @@
     },
     "hms": {
       "Package": "hms",
-      "Version": "1.1.3",
+      "Version": "1.1.4",
       "Source": "Repository",
       "Title": "Pretty Time of Day",
-      "Date": "2023-03-21",
-      "Authors@R": "c( person(\"Kirill\", \"Müller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\"), person(\"RStudio\", role = \"fnd\") )",
+      "Date": "2025-10-11",
+      "Authors@R": "c( person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\"), person(\"Posit Software, PBC\", role = \"fnd\", comment = c(ROR = \"03wc8by49\")) )",
       "Description": "Implements an S3 class for storing and formatting time-of-day values, based on the 'difftime' class.",
+      "License": "MIT + file LICENSE",
+      "URL": "https://hms.tidyverse.org/, https://github.com/tidyverse/hms",
+      "BugReports": "https://github.com/tidyverse/hms/issues",
       "Imports": [
+        "cli",
         "lifecycle",
         "methods",
         "pkgconfig",
@@ -2357,19 +2361,14 @@
         "pillar (>= 1.1.0)",
         "testthat (>= 3.0.0)"
       ],
-      "License": "MIT + file LICENSE",
-      "Encoding": "UTF-8",
-      "URL": "https://hms.tidyverse.org/, https://github.com/tidyverse/hms",
-      "BugReports": "https://github.com/tidyverse/hms/issues",
-      "RoxygenNote": "7.2.3",
-      "Config/testthat/edition": "3",
-      "Config/autostyle/scope": "line_breaks",
-      "Config/autostyle/strict": "false",
       "Config/Needs/website": "tidyverse/tidytemplate",
+      "Config/testthat/edition": "3",
+      "Encoding": "UTF-8",
+      "RoxygenNote": "7.3.3.9000",
       "NeedsCompilation": "no",
-      "Author": "Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), R Consortium [fnd], RStudio [fnd]",
+      "Author": "Kirill Müller [aut, cre] (ORCID: <https://orcid.org/0000-0002-1416-3412>), R Consortium [fnd], Posit Software, PBC [fnd] (ROR: <https://ror.org/03wc8by49>)",
       "Maintainer": "Kirill Müller <kirill@cynkra.com>",
-      "Repository": "RSPM"
+      "Repository": "CRAN"
     },
     "htmltools": {
       "Package": "htmltools",
@@ -2517,10 +2516,10 @@
     },
     "igraph": {
       "Package": "igraph",
-      "Version": "2.1.4",
+      "Version": "2.2.1",
       "Source": "Repository",
       "Title": "Network Analysis and Visualization",
-      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Tamás\", \"Nepusz\", , \"ntamas@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-1451-338X\")), person(\"Vincent\", \"Traag\", role = \"aut\", comment = c(ORCID = \"0000-0003-3170-3879\")), person(\"Szabolcs\", \"Horvát\", , \"szhorvat@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-3100-523X\")), person(\"Fabio\", \"Zanini\", , \"fabio.zanini@unsw.edu.au\", role = \"aut\", comment = c(ORCID = \"0000-0001-7097-8539\")), person(\"Daniel\", \"Noom\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Maëlle\", \"Salmon\", role = \"ctb\"), person(\"Michael\", \"Antonov\", role = \"ctb\"), person(\"Chan Zuckerberg Initiative\", role = \"fnd\") )",
+      "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Tamás\", \"Nepusz\", , \"ntamas@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-1451-338X\")), person(\"Vincent\", \"Traag\", role = \"aut\", comment = c(ORCID = \"0000-0003-3170-3879\")), person(\"Szabolcs\", \"Horvát\", , \"szhorvat@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-3100-523X\")), person(\"Fabio\", \"Zanini\", , \"fabio.zanini@unsw.edu.au\", role = \"aut\", comment = c(ORCID = \"0000-0001-7097-8539\")), person(\"Daniel\", \"Noom\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Michael\", \"Antonov\", role = \"ctb\"), person(\"Chan Zuckerberg Initiative\", role = \"fnd\", comment = c(ROR = \"02qenvm24\")), person(\"David\", \"Schoch\", , \"david.schoch@cynkra.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-2952-4812\")), person(\"Maëlle\", \"Salmon\", , \"maelle@cynkra.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-2815-0399\")) )",
       "Description": "Routines for simple graphs and network analysis. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.",
       "License": "GPL (>= 2)",
       "URL": "https://r.igraph.org/, https://igraph.org/, https://igraph.discourse.group/",
@@ -2537,7 +2536,7 @@
         "magrittr",
         "Matrix",
         "pkgconfig (>= 2.0.0)",
-        "rlang",
+        "rlang (>= 1.1.0)",
         "stats",
         "utils",
         "vctrs"
@@ -2565,19 +2564,22 @@
         "cpp11 (>= 0.5.0)"
       ],
       "VignetteBuilder": "knitr",
-      "Config/Needs/build": "roxygen2, devtools, irlba, pkgconfig, igraph/igraph.r2cdocs, moodymudskipper/devtag",
+      "Config/build/compilation-database": "false",
+      "Config/build/never-clean": "true",
+      "Config/comment/compilation-database": "Generate manually with pkgload:::generate_db() for faster pkgload::load_all()",
+      "Config/Needs/build": "r-lib/roxygen2, devtools, irlba, pkgconfig, igraph/igraph.r2cdocs, moodymudskipper/devtag",
       "Config/Needs/coverage": "covr",
-      "Config/Needs/website": "readr",
+      "Config/Needs/website": "here, readr, tibble, xmlparsedata, xml2",
       "Config/testthat/edition": "3",
       "Config/testthat/parallel": "true",
-      "Config/testthat/start-first": "vs-es, scan, vs-operators, weakref, watts.strogatz.game",
+      "Config/testthat/start-first": "aaa-auto, vs-es, scan, vs-operators, weakref, watts.strogatz.game",
       "Encoding": "UTF-8",
-      "RoxygenNote": "7.3.2.9000",
+      "RoxygenNote": "7.3.3.9000",
       "SystemRequirements": "libxml2 (optional), glpk (>= 4.57, optional)",
       "NeedsCompilation": "yes",
-      "Author": "Gábor Csárdi [aut] (<https://orcid.org/0000-0001-7098-9676>), Tamás Nepusz [aut] (<https://orcid.org/0000-0002-1451-338X>), Vincent Traag [aut] (<https://orcid.org/0000-0003-3170-3879>), Szabolcs Horvát [aut] (<https://orcid.org/0000-0002-3100-523X>), Fabio Zanini [aut] (<https://orcid.org/0000-0001-7097-8539>), Daniel Noom [aut], Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), Maëlle Salmon [ctb], Michael Antonov [ctb], Chan Zuckerberg Initiative [fnd]",
+      "Author": "Gábor Csárdi [aut] (ORCID: <https://orcid.org/0000-0001-7098-9676>), Tamás Nepusz [aut] (ORCID: <https://orcid.org/0000-0002-1451-338X>), Vincent Traag [aut] (ORCID: <https://orcid.org/0000-0003-3170-3879>), Szabolcs Horvát [aut] (ORCID: <https://orcid.org/0000-0002-3100-523X>), Fabio Zanini [aut] (ORCID: <https://orcid.org/0000-0001-7097-8539>), Daniel Noom [aut], Kirill Müller [aut, cre] (ORCID: <https://orcid.org/0000-0002-1416-3412>), Michael Antonov [ctb], Chan Zuckerberg Initiative [fnd] (ROR: <https://ror.org/02qenvm24>), David Schoch [aut] (ORCID: <https://orcid.org/0000-0003-2952-4812>), Maëlle Salmon [aut] (ORCID: <https://orcid.org/0000-0002-2815-0399>)",
       "Maintainer": "Kirill Müller <kirill@cynkra.com>",
-      "Repository": "RSPM"
+      "Repository": "CRAN"
     },
     "isoband": {
       "Package": "isoband",
@@ -4289,11 +4291,11 @@
     },
     "textshaping": {
       "Package": "textshaping",
-      "Version": "1.0.3",
+      "Version": "1.0.4",
       "Source": "Repository",
       "Title": "Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text Shaping",
       "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )",
-      "Description": "Provides access to the text shaping functionality in the 'HarfBuzz' library and the bidirectional algorithm in the 'Fribidi' library.  'textshaping' is a low-level utility package mainly for graphic devices that expands upon the font tool-set provided by the 'systemfonts' package.",
+      "Description": "Provides access to the text shaping functionality in the 'HarfBuzz' library and the bidirectional algorithm in the 'Fribidi' library. 'textshaping' is a low-level utility package mainly for graphic devices that expands upon the font tool-set provided by the 'systemfonts' package.",
       "License": "MIT + file LICENSE",
       "URL": "https://github.com/r-lib/textshaping",
       "BugReports": "https://github.com/r-lib/textshaping/issues",
@@ -4304,7 +4306,7 @@
         "lifecycle",
         "stats",
         "stringi",
-        "systemfonts (>= 1.1.0)",
+        "systemfonts (>= 1.3.0)",
         "utils"
       ],
       "Suggests": [
@@ -4970,7 +4972,7 @@
     },
     "xfun": {
       "Package": "xfun",
-      "Version": "0.53",
+      "Version": "0.54",
       "Source": "Repository",
       "Type": "Package",
       "Title": "Supporting Functions for Packages Maintained by 'Yihui Xie'",
@@ -5009,7 +5011,7 @@
       "URL": "https://github.com/yihui/xfun",
       "BugReports": "https://github.com/yihui/xfun/issues",
       "Encoding": "UTF-8",
-      "RoxygenNote": "7.3.2",
+      "RoxygenNote": "7.3.3",
       "VignetteBuilder": "litedown",
       "NeedsCompilation": "yes",
       "Author": "Yihui Xie [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-0645-5666>, URL: https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (ORCID: <https://orcid.org/0000-0002-5329-5987>), Christophe Dervieux [ctb]",
@@ -5018,7 +5020,7 @@
     },
     "xml2": {
       "Package": "xml2",
-      "Version": "1.4.0",
+      "Version": "1.4.1",
       "Source": "Repository",
       "Title": "Parse XML",
       "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Jeroen\", \"Ooms\", email = \"jeroenooms@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Foundation\", role = \"ctb\", comment = \"Copy of R-project homepage cached as example\") )",
@@ -5039,7 +5041,6 @@
         "curl",
         "httr",
         "knitr",
-        "magrittr",
         "mockery",
         "rmarkdown",
         "testthat (>= 3.2.0)",
@@ -5048,7 +5049,7 @@
       "VignetteBuilder": "knitr",
       "Config/Needs/website": "tidyverse/tidytemplate",
       "Encoding": "UTF-8",
-      "RoxygenNote": "7.3.2",
+      "RoxygenNote": "7.3.3",
       "SystemRequirements": "libxml2: libxml2-dev (deb), libxml2-devel (rpm)",
       "Collate": "'S4.R' 'as_list.R' 'xml_parse.R' 'as_xml_document.R' 'classes.R' 'format.R' 'import-standalone-obj-type.R' 'import-standalone-purrr.R' 'import-standalone-types-check.R' 'init.R' 'nodeset_apply.R' 'paths.R' 'utils.R' 'xml2-package.R' 'xml_attr.R' 'xml_children.R' 'xml_document.R' 'xml_find.R' 'xml_missing.R' 'xml_modify.R' 'xml_name.R' 'xml_namespaces.R' 'xml_node.R' 'xml_nodeset.R' 'xml_path.R' 'xml_schema.R' 'xml_serialize.R' 'xml_structure.R' 'xml_text.R' 'xml_type.R' 'xml_url.R' 'xml_write.R' 'zzz.R'",
       "Config/testthat/edition": "3",