change running scripts structure #26
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Please do not merge this PR yet. |
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Hi @jprmachado |
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This PR aims to create a structure in the shell scripts so is not require to comment and uncomment depending if is running toil or docker/singularity version.
If approved this PR this will have implications in the #24 and should be changed accordingly
The Toil script also solves one issue that we got initially that was Toil was not creating util directories (e.g. log)