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econetoolbox / EcologicalNetworksDynamics.jl Public

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Boost internals.#185

Draft

iago-lito wants to merge 72 commits intodeveconetoolbox/EcologicalNetworksDynamics.jl:devfrom

boosteconetoolbox/EcologicalNetworksDynamics.jl:boostCopy head branch name to clipboard

Conversation Commits72 (72)Checks Files changed

Draft

Boost internals.#185
iago-lito wants to merge 72 commits intodevfrom
boost

Commits

Commits on Jan 22, 2026

🤫 Silent all package prior to internals refactoring.
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✨ Introduce COW-protected `Aggregate`.
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✨ Display aggregate and views.
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🛡️ Basic aggregate testing + snapshot-testing utils.
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🗲 Drop thread-safety: uncertain and complicated.
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🛡️ Test aggregate views aliasing.
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🔧 Distinguish MIME vs regular Aggregate display.
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🌱 Setup overal design for internal network.
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🚧 Into implementing `Network`.
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🌱 Introduce `Class` data and `Restriction`s.
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🌱 Introduce `Network`, appending classes and nodes data.
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🌱 Basic NodesView.
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🛡️ Upgrade Aggregate tests into Network tests.
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🧹 Don't store the root class aside.
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🛡️ Test nodes classes hierarchy.
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🛡️ Test basic nodes views.
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✨ Export nodes data under various forms.
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🛡️ Test network dedicated errors.
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🧹 Stop specializing over restriction type.
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✨ Implementing basic Topologies: SparseForeign.
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✨ SparseReflexive.
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🔧 `filter_map` and `stopwhen` iterators adapters.
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✨ SparseSymmetric.
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✨ FullForeign.
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✨ Dense topologies.
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👀 Self-review 2 months later.
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🐛 Classes refer to their parents by name.
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🔧 Read/mutate/reassign are proper *transactions*.
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✨ Add webs to networks.
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✨ Basic web views.
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✨ Export edge data to matrices.
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🛡️ Reify unexpected transaction corruption errors.
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🔮 Get ready for next steps.
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🌱 Into Differentials submodule.
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🌱 Into generating growth code.
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🔧 Organize generated artifacts ⚠ world age error.
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🔧 Fix world age use. Export generated code.
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🎉 Simulate model with efficient generated code!
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🗲 Vectorize growth inner loop.
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🧹 Drop differentials tests for of end-user tests.
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🔧 Reintegrate & fix the component Framework.
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🔧 Rewire code up to `Species` component.
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🚧 🔧 Get ready to update `GraphViews`.
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🌱 Introduce `NodesView`.
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🔧 Cache restrictions without explicit root class.
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✨ Introduce `SparseRanges` restriction.
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✨ Calculate (grand-)+restrictions and expand.
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🐛 Check label view ref prior to transaction.
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🌱 Into SparseNodeViews, caching restrictions.
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🔧 Rewire up to growth_rate as an example subclass field.
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✨ SparseNodeViews: stop inheriting from AbstractVectors.
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🧹 Clear dev annotations, spec next steps.
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✨ Restriction `tolocal` enables sparse nodes indexing.
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🛡️ Expose `is_deep_immutable` for lib devs checks.
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✨ EdgesView.
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🚧 Generic class component?
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🔥🧊 *Much* reduce framework codegen.
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✨ Generic @class_component.
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✨ @class_component properties & display.
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✨ Late properties aliasing.
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🚧 Into reintroducing 'Foodweb'.
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🔧 Stop accessing system fields via getproperty.
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✨ Internal network 'reverse' index.
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✨Introduce names and masks views.
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✨ Special display for empty property spaces.
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✨ Extract @class_properties for Foodweb-derived classes.
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✨ Generic class mask.
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✨ Generic class indices.
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🧹 Get rid of duplicated class files.
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✨ Generic web properties.
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🧹 Properties targets are always system values.
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✨ ProducersWeb derived from Foodweb.
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