A collection of tools to process raw AZFP data collected from glider deployments and calculate concentration/biomass estimates for zooplankton and fish from the results.
Author: Delphine Mossman
Most of these files are standalone code files, with the exception of the Python files in raw_data_processing. In that folder you will find an environment file that should give you the necessary packages for a local conda environment.
The order of operations goes like this:
- raw_data_processing
- acoustic_abundance_estimates
- alignment_and_plotting
Each folder has its own readme which goes into further detail about each file.
The "misc" folder contains various one-off files unrelated to the processing pipeline and a couple of necessary Matlab functions.