feat: Add Chap-compatible CSV export with global temporal continuity [CLIM-360]#6
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karimbahgat merged 7 commits intomainfrom Jan 28, 2026
Merged
feat: Add Chap-compatible CSV export with global temporal continuity [CLIM-360]#6karimbahgat merged 7 commits intomainfrom
karimbahgat merged 7 commits intomainfrom
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Jan 27, 2026
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Looks great and seems very robust, with plenty of tests. Added some commits to simplify type hints and minor tweaks for code clarity. Ready for merge.
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This PR adds a Chap-compatible CSV export utility for producing training datasets that can be consumed directly by Chap.
What’s included
A CSV exporter that maps harmonized DataFrames to the Chap schema:
time_period,location,disease_casespopulationEnforcement of global temporal continuity across all locations:
A diagnostic helper (
find_temporal_gaps) that returns the complete list of missing periods per location to support upstream data repair or imputationTime-period normalization and validation for monthly and weekly data
Configurable continuity handling at export time (
error,warn,ignore)Design notes
The exporter is intentionally strict and opinionated: its goal is to produce CSVs that are immediately usable by Chap without relying on implicit padding, masking, or downstream fixes.
Data completeness and imputation decisions are expected to happen upstream and are supported via explicit diagnostics rather than silent behavior.
Tests
Unit tests cover schema enforcement, time-period normalization, global continuity semantics, continuity policies, and successful CSV/file output.