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Unable to read gzip compressed file

Status: Open.

#618 In dereneaton/ipyrad;

· aidanshaw opened on Jan 7, 2026

Step 7 error missing VCF output after branching and renaming samples

Status: Open.

#617 In dereneaton/ipyrad;

· jflemi17 opened on Dec 15, 2025

"engines" error message

Status: Open.

#614 In dereneaton/ipyrad;

· jesus-mavarez opened on Nov 14, 2025

problem installing on mac m4

Status: Open.

#613 In dereneaton/ipyrad;

· benfitz01 opened on Nov 3, 2025

Paired-end R1/R2 reads not merging in ddRAD assembly #step1

Status: Open.

#612 In dereneaton/ipyrad;

· manhbio opened on Oct 27, 2025

Mapping to Whole reference genome, ipyrad error step 3

Status: Open.

#610 In dereneaton/ipyrad;

· littlelimia opened on Oct 13, 2025

Step 7 error. integer division or modulo by zero

Status: Open.

#606 In dereneaton/ipyrad;

· jesus-mavarez opened on Sep 13, 2025

work with demultiplexed sequence

Status: Open.

#604 In dereneaton/ipyrad;

· alnusmeinata opened on Jun 26, 2025

Encountered an Error. Message: Can't recognize paired fastq files.

Status: Open.

#601 In dereneaton/ipyrad;

· ClaudiaPaetzold opened on May 23, 2025

3D-GBS, not suitable with pair3rad, because SE data

Status: Open.

#600 In dereneaton/ipyrad;

· edgagnon opened on Apr 28, 2025

analysis.tetrad: Broken for toytree and updated Tetrad API

Status: Open.

#599 In dereneaton/ipyrad;

· isaacovercast opened on Apr 14, 2025

error in step 5

Status: Open.

#592 In dereneaton/ipyrad;

· onmikula opened on Feb 6, 2025