v1.1

Summary of changes

This major release of the Easy Genomics project now supports the launching of both Seqera Pipelines and AWS HealthOmics Private Workflows through it's intuitive user interface, easy-to-use File Manager to access to results, and enhanced Organization, Laboratory, and User management controls.

What's Changed

• fix: remove clickable rows for users by @PurcyTwoBulls in #260
• fix(EG-653): update config to inc 'seqera-api-base-url' setting & root 'build-and-deploy' convenience script by @zigtan in #262
• feat(EG-649): add favicon + app icons by @simondib in #264
• fix(EG-623): missing toast icons + improved styles by @simondib in #263
• feat(EG-662): improve eslint + prettier by @simondib in #265
• fix(EG-664): update lab role in UI on change by @simondib in #266
• fix(EG-665): improve FE www S3 bucket name uniqueness to improve deployment reliability by @zigtan in #268
• feat(EG-557): fix all eslint problems by @simondib in #269
• fix: use case insensitive sorting for name of users, labs and orgs by @PurcyTwoBulls in #267
• fix(EG-668): lint package folders separately to fix context issue by @simondib in #272
• fix: apply apache license with correct copyright name and year by @PurcyTwoBulls in #274
• feat(EG-641): change default labs tab to Runs by @simondib in #277
• feat: new api for testing nextflow tower credentials by @PurcyTwoBulls in #273
• feat(EG-586): change "Back to Pipelines" button label to "Back to Runs" by @simondib in #276
• feat(EG-657): force input of lab workspace id and personal access token by @simondib in #278
• feat(EG-475): Playwright end-to-end tests by @simondib in #275
• fix(EG-571): add manifest name underneath run name by @simondib in #280
• chore: use correct headers for error responses by @PurcyTwoBulls in #279
• fix(EG-571): pipeline name by @simondib in #283
• chore: fields can not be empty by @PurcyTwoBulls in #282
• feat(EG-666): simplify configuration for deployment and development by @zigtan in #281
• feat(EG-638): remove transactionId variable from stepper 2 and add to lab/[labId]/index.vue page usePipelineRunStore() by @zigtan in #284
• fix(EG-686): fix launch pipeline run after previous cancellation by @zigtan in #285
• feat(EG-679): add userName data to runs tab by @simondib in #288
• feat(EG-677): add Playwright to CI/CD by @simondib in #287
• chore: upgrade node packages by @simondib in #289
• feat: cognito password strength check during build by @PurcyTwoBulls in #286
• feat(EG-691): Playwright Update Org by @marvinsumali in #290
• feat(EG-681): add VPC support by @zigtan in #291
• fix(EG-697): fix local FE build process to ensure shared-lib is included to run nuxt-dev by @zigtan in #292
• Feat/eg 659 read workflow reports by @PurcyTwoBulls in #293
• fix(EG-701): params reactivity by @simondib in #294
• feat(EG-420): restrict create-organization api to the SystemAdmin's Cognito Auth session by @zigtan in #295
• feat(EG-700): make s3 url editable input by @simondib in #296
• feat(EG-579): add cancel workflow UI functionality by @willholt-tb in #297
• fix(EG-701): pipeline param inputs not updating in store by @simondib in #298
• feat(EG-704): update list-organization API for SysAdmin/User filtering by @zigtan in #299
• feat(EG-713): added timeout in editlab test by @marvinsumali in #302
• feat(EG-689): don't require workspace id in popup message by @willholt-tb in #303
• feat(EG-722): grant access to a lab by @marvinsumali in #304
• feat(EG-724): add new timeout in EditLab by @marvinsumali in #305
• fix(EG-723): enhance update-laboratory API to support S3 bucket modification by @zigtan in #306
• feat(EG-671): select s3 bucket in Lab details page by @simondib in #308
• fix(EG-690): fix pipeline run navigate-out confirmation logic by @willholt-tb in #307
• feat(EG-503): enable user management for invited users by @willholt-tb in #310
• fix(EG-718): hide params section if its items are all hidden by @simondib in #311
• feat(EG-573): make submitted pill grey by @willholt-tb in #312
• feat: unified error response and custom errors by @PurcyTwoBulls in #300
• fix(EG-730): typo by @simondib in #313
• fix(EG-652): make Add Lab Users button toggle user selection elements by @willholt-tb in #314
• fix(EG-502): make grant access buttons load individually instead of all together by @willholt-tb in #315
• feat(EG-496): add option to remove user from lab from edit user page by @willholt-tb in #317
• fix(EG-680): minor updates to support NF integration by @zigtan in #309
• feat(EG-648): direct to edit user access from clicking user on organization page by @willholt-tb in #318
• feat(EG-731): no default s3 bucket when creating lab by @simondib in #319
• chore(EG-735): upgrade packages by @simondib in #321
• feat(EG-737): add S3 bucket selection in CreateLab by @marvinsumali in #322
• feat(EG-489): implement consistent sorting on all tables by @willholt-tb in #316
• feat(EG-738): playwright invite and remove Orguser by @marvinsumali in #325
• feat(EG-733|EG-742): allow workspace id to be empty and validate NF integration by @zigtan in #328
• feat(EG-675): update CDK version & add cdk-nag support by @zigtan in #326
• feat(EG-507): require org admin to create lab by @willholt-tb in #327
• fix(EG-507): missed access step on permissions storage by @willholt-tb in #329
• feat(EG-734): update nextflow apis to support empty workspace by @zigtan in #330
• fix(eg-747): update packages to fix front-end deployment by @zigtan in #334
• fix(EG-622): prevent uploading of non-gz file types by @simondib in #335
• feat(EG-508): require lab manager to edit lab by @willholt-tb in #331
• feat(EG-509): require org admin to delete lab by @willholt-tb in #332
• feat(EG-510): require org admin to view/edit orgs by @willholt-tb in #333
• feat(EG-510): restrict user access by @PurcyTwoBulls in #324
• refactor: permissions terminology by @willholt-tb in #336
• feat(EG-511): show/allow access to only labs that the user has permission to view by @willholt-tb in #337
• fix(EG-748): update www-hosting-construct to improve cloudfront dist logging by @zigtan in #340
• fix(EG-751): update [email protected] OrganizationAccess to inc OrganizationAdmin flag by @zigtan in #339
• fix(EG-750): setup shared s3 bucket with cors settings for deployment by @zigtan in #338
• fix(EG-754): update read-laboratory API to allow OrganizationAdmin access by @zigtan in #341
• feat(EG-758): ad...

v1.0.1 (20240819)

This is a demo test release as part of the preparations for the AMD Academy (Advanced Molecular Detection) 2024 training session organized by APHL (Association of Public Health Laboratories).

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What's Changed

• feat(EG-309): add conventional commit message & branch naming restrictions by @zigtan in #1
• feat: eg 309 add separate deployment scripts & README.md file by @zigtan in #2
• chore: minor README.md correction by @zigtan in #3
• fix: update projenrc.ts & README.md to streamline dev commands 'build-all', 'test-all', 'deploy-all' by @zigtan in #4
• feat: add AWS HealthOmics Private Workflows Dynamodb table by @zigtan in #5
• feat: simplify lambda-construct for easier development by @zigtan in #6
• feat: add CRUD APIs to manage private-workflow records by @zigtan in #7
• feat: add ability to create organizations by @zigtan in #8
• feat: add ability to read an organization by @zigtan in #9
• feat: add ability to delete an organization by @zigtan in #10
• feat: add ability to update an organization by @zigtan in #11
• fix: fix front-end stack to enable FE deployment by @zigtan in #12
• fix: update BE stack to support envName 'quality' as a Dev Environment by @zigtan in #13
• feat: simplify config & fe deployment by @zigtan in #14
• feat: add list, query, & read labs apis by @zigtan in #15
• chore: update branch name validation by @zigtan in #16
• feat: create lab api by @zigtan in #17
• feat: delete lab api by @zigtan in #18
• feat: update lab api by @zigtan in #19
• feat: update existing apis for data validation & code cleanup by @zigtan in #20
• fix: eg-354 fix create laboratory api error by @zigtan in #21
• feat: eg-251 add laboratory user management apis by @zigtan in #22
• fix: eg-356 update list-laboratories API to query results to a specific organizationId by @zigtan in #23
• feat: eg-357 update CDK AWS regions to inc ap-southeast-2 to be used to aid Pilot 1 development by @zigtan in #24
• fix: eg-363 fix type error in .projenrc.ts by @zigtan in #25
• feat: eg-250 add list organization users api by @zigtan in #26
• feat: eg-365 add add-organization-user api by @zigtan in #27
• feat: eg-368 add remove organization user api by @zigtan in #28
• feat: eg-364 frontend scaffolding by @simondib in #29
• feat: eg-367 add edit organization user api by @zigtan in #30
• feat: eg-236 add create user api by @zigtan in #31
• feat: eg-361 add lab listing + basic auth by @simondib in #32
• feat: eg-248 organizations listing by @simondib in #33
• fix: eg-380 update laboratory lambdas to call queryByLaboratoryId() by @zigtan in #35
• feat: eg-379 add org & lab description optional field by @zigtan in #34
• feat(EG-379): match Description key to api change by @simondib in #36
• fix(EG-383): add data validation check for add-laboratory-user API by @zigtan in #37
• fix(EG-382): fix tables UI for empty state by @simondib in #38
• fix(EG-385): fix FE error handling responses by @zigtan in #39
• fix(EG-384): fix table sorting by @simondib in #40
• fix(EG-385): remove S3 public access settings conflicting with static web hosting throu CloudFront by @zigtan in #41
• feat: eg-381 add organization & laboratory user listing with user details apis by @zigtan in #42
• fix(EG-387): add missing IAM policies for additional data lookups for add-laboratory-user API by @zigtan in #43
• feat(EG-362): lab users listing by @simondib in #44
• fix(EG-389): add missing BE @aws-sdk/client-cognito-identity-provide rdev dependency for seeding by @zigtan in #45
• feat(EG-372): view organization details by @simondib in #46
• fix(EG-372): fix tabs ui styles not being honoured by @simondib in #47
• fix(EG-392): enforce light mode in nuxt config by @simondib in #48
• feat(EG-313/EG-391): update config to simplify development setup & deployment by @zigtan in #49
• feat(EG-300): create an organisation by @shaunprocter-twobulls in #50
• feat(eg-372): refactor for updated ACs by @simondib in #51
• feat(EG-374): add create a lab by @simondib in #52
• feat(deploy): ignore easy-genomics.yaml and replace with example config by @simondib in #53
• feat(EG-359): add CI/CD support for quality deployment by @zigtan in #54
• feat(EG-402): lab description optional by @simondib in #55
• chore(EG-398): update README.md & convenience scripts by @zigtan in #56
• feat(EG-407): update list-organization-users-details api by @zigtan in #57
• chore(EG-358): rename data-seeding-nested-stack to data-provisioning-nested-stack by @zigtan in #58
• fix(EG-423): improve CI/CD deployment configuration by @zigtan in #59
• feat(EG-358): provision system admin account on deployment by @zigtan in #60
• feat(eg-400): add toasts + refactor request handling by @simondib in #61
• chore: update pnpm-lock.yaml to resolve CI/CD quality deployment error by @zigtan in #62
• feat(EG-49): Remove user from lab by @shaunprocter-twobulls in #63
• fix(EG-429): list organisations page by @shaunprocter-twobulls in #64
• fix(EG-430): await non async function by @shaunprocter-twobulls in #65
• feat(EG-402): add build number to deployed code by @simondib in #67
• feat(EG-386): refactor infrastructure to support cognito event triggers & add post authorization logic by @zigtan in #66
• feat(eg-409): sign in page by @simondib in #68
• fix(EG-439): optional egbutton props by @shaunprocter-twobulls in #70
• fix(EG-438): update bootstrap-all command README.md by @shaunprocter-twobulls in #69
• feat(EG-433): create user invite api for onboarding users by @zigtan in #71
• feat(EG-403): view all org users by @simondib in #72
• feat(EG-378): invite user to organization by @simondib in #73
• feat(EG-378): avatar colours; invite users toggle button by @simondib in #76
• feat(EG-444): add user orgs & labs access fields by @zigtan in #74
• feat(EG-444): improve user organization access by @zigtan in #77
• fix(eg-458): Invite User fixes by @simondib in #79
• feat(eg-405): add Org Admin toggle by @simondib in #80
• fix(EG-444): improve add-laboratory-user API to check LaboratoryUser record doesn't already exist by @zigtan in #81
• fix(EG-461): fix DynamoDB marshalling error when LaboratoryAccess object is undefined by @zigtan in #83
• feat(EG-465): update add-organization-user api by @zigtan in https://github.com/twobul...