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This repository shares the code for scoring the Candida albicans in vivo data (mouse SI & GI model). Example input files are provided, with which the users can run the code step by step to generate the scores for new input data.

More instructions will be updated soon.

Contact: Xiang Zhang (zhan6668@umn.edu; zhangab18@gmail.com)

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C. albicans in vivo scoring pipeline

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  • Python 94.6%
  • R 5.4%