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- Added an Evaluator class to compute various segmentation metrics..
- Updated MedSAM3DInferenceConfig to include a list of evaluation metrics.
- Adjusted the inference logic to utilize the new evaluation metrics for reporting results.
@JoshuaSiraj JoshuaSiraj requested a review from strixy16 October 30, 2025 19:48
@JoshuaSiraj JoshuaSiraj changed the title feat: add propaget with bbox as option and add more metrics (Closes #11) feat: add propagate with bbox as option and add more metrics (Closes #11) Oct 30, 2025
@JoshuaSiraj JoshuaSiraj linked an issue Oct 30, 2025 that may be closed by this pull request
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Remove this

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?

default=True,
description="Whether to propagate the mask with the bounding box.",
propagate_with_gt: bool = Field(
default=False,
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Set this to True

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This is using the ground truth not bbox

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Do we save out enough details to run the evaluator without rerunning all of MedSAM?

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The prediction gets saved so yes

@JoshuaSiraj JoshuaSiraj merged commit 4ee259d into main Oct 31, 2025
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@JoshuaSiraj JoshuaSiraj deleted the Josh/dev branch October 31, 2025 19:34
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Add more metrics

3 participants