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addddisonnnn/README.md

Greetings, I'm Addison!

🧬 M.Sc. Bioinformatics Student | Computational Genomics Researcher

I am a Master's student specializing in Bioinformatics with a strong background in large-scale data processing, reproducible pipelines, and computational genomics. My work focuses on leveraging High-Performance Computing (HPC) environments and machine learning to tackle complex biological problems, including de novo genome assembly and regulatory element prediction.

💻 Key Expertise & Toolkit

I work with data processing, reproducible workflows, and advanced computational models.

Programming & Data Science: Python R C++ Java Bash Git

Reproducibility & HPC: Nextflow Snakemake Docker Singularity SLURM/HPC

Core Bioinformatics Tools:

  • Genomic Processing: BWA, samtools, bedtools, FastQC
  • Assembly: Hifiasm, Flye (Long-Read Assembly)
  • Specialized: AlphaFold (Structure), SCRMshaw (Enhancer Prediction)

🔗 Connect With Me

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  1. Validating-Chronic-Inflammation-Biomarkers-via-Integrated-Bioinformatics-ML Validating-Chronic-Inflammation-Biomarkers-via-Integrated-Bioinformatics-ML Public

    Documenting my progress towards recreating a paper revolving around identifying biomarkers contributing towards chronic inflammatory diseases through integrated bioinformatics and machine learning …

    R 1

  2. RNAseq-Analysis-Pipeline RNAseq-Analysis-Pipeline Public

    RNAseq Analysis and Pipeline Project of sample quality control, alignment, quantification and differential expression analysis.

    Nextflow 1

  3. Genome-Assembly-Pipeline Genome-Assembly-Pipeline Public

    Genome Assembly Project utilizing a myriad of assembly tools and analytical methods

    HTML 1

  4. KLF4-Yamanaka-Pioneer-Factor-Project KLF4-Yamanaka-Pioneer-Factor-Project Public

    Documenting my progress towards discovering relevant determinants and better understanding the mechanisms and limitations of KLF4 pioneer factor ability as well as establishing familiarity with the…

    Shell

  5. PB-J-Society/About-the-PB-J-Society PB-J-Society/About-the-PB-J-Society Public

    The core infrastructure and documentation about how the PB&J Society operates and is structured

    1

  6. ChIPseq-Analysis-Pipeline ChIPseq-Analysis-Pipeline Public

    Analysis of ChIPseq samples of RUNX1 Binding in MCF-7 Cells

    Python 1