feat: include additional namespaces in Zenodo CSV export#654
Merged
bencap merged 1 commit intorelease-2026.1.1from Mar 2, 2026
Merged
Conversation
21b178b to
e26bd2b
Compare
jstone-dev
approved these changes
Feb 28, 2026
Merged
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This pull request updates the
export_public_data.pyscript to enhance the exported variant data for score sets. The main improvement is the inclusion of additional annotation columns and post-mapped HGVS information in the CSV exports, making the data more comprehensive for downstream users.Enhancements to CSV export:
vep,gnomad, andclingenannotation columns, and enabledinclude_post_mapped_hgvsfor a separateannotationcsv file during export.