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feat: include additional namespaces in Zenodo CSV export#654

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bencap merged 1 commit intorelease-2026.1.1from
feature/bencap/643/include-all-namespaces-in-zenodo-csv-export
Mar 2, 2026
Merged

feat: include additional namespaces in Zenodo CSV export#654
bencap merged 1 commit intorelease-2026.1.1from
feature/bencap/643/include-all-namespaces-in-zenodo-csv-export

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@bencap bencap commented Feb 6, 2026

This pull request updates the export_public_data.py script to enhance the exported variant data for score sets. The main improvement is the inclusion of additional annotation columns and post-mapped HGVS information in the CSV exports, making the data more comprehensive for downstream users.

Enhancements to CSV export:

  • Added vep, gnomad, and clingen annotation columns, and enabled include_post_mapped_hgvs for a separate annotation csv file during export.

@bencap bencap requested review from jstone-dev and sallybg February 6, 2026 21:29
@bencap bencap linked an issue Feb 6, 2026 that may be closed by this pull request
@bencap bencap force-pushed the feature/bencap/643/include-all-namespaces-in-zenodo-csv-export branch from 21b178b to e26bd2b Compare February 6, 2026 22:39
@bencap bencap marked this pull request as ready for review February 6, 2026 22:39
@bencap bencap merged commit f28e36a into release-2026.1.1 Mar 2, 2026
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@bencap bencap deleted the feature/bencap/643/include-all-namespaces-in-zenodo-csv-export branch March 2, 2026 17:41
@bencap bencap mentioned this pull request Mar 2, 2026
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Use new CSV generation in the Zenodo export

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