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ShenLab-Genomics/ASOMAR

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Project Title

ASOMAR

Description

This project is an implementaion of ASOMAR, a deep learning model to predict high efficiency ASO for RNA degradation.

Installation

Requirements

Ensure you have the following versions installed:

  • pandas==2.2.3
  • tensorflow==2.18.0
  • scikit-learn==1.5.2
  • keras==3.6.0
  • matplotlib==3.9.2
  • numpy==2.0.0
  • Bio==1.7.1

You can install the required packages using the following command:

pip install -r requirements.txt

To train the model using the following command:

python train.py train.csv

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