ROBOMCP

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MCP Client/Server for ROBOKOP

Multi-Component Protocol (MCP) agent for querying some by ROBOKOP endpoints here using OpenAI agents-and MCP servers calling our structured tools.

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Available Tools

Tool	Description
get_normalized_curie(text)	Converts a biomedical name to a normalized CURIE.
get_current_nodes(curie)	Retrieves detailed node info from ROBOKOP.
get_current_edges(curie, category=None, predicate=None)	Fetches edges connected to a node, optionally filtered by category/predicate.
get_edge_summary(curie)	Returns a summary of all predicates and attached node types + counts for a given node.

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Example Queries

What diseases are treated by Metformin?

Show me nodes related to MONDO:0005148

What types of relationships are connected to NCBIGene:19?

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Development Notes

• TOOLS:

  • Currently, tools are :
    • defined in the robokop_mcp_server.py module using @function_tool decorators from the openai-agents framework.
    • added to a list of tools that the mcp agent can use in main.py

• MCP SERVER:

  • MCP Servers are started via uvx and handled using MCPServerStdio.