Calibration Option for Burden Scores#111

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meyerkm wants to merge 39 commits intomainfrom

score-calibration

Commits on Jul 15, 2024

add center & scaling feature for burden scores
meyerkm
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Commits on Jul 17, 2024

fixup snakemake rule spacing
meyerkm
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Add in center_scale_burden option to config generation
meyerkm
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fixup! Format Python code with psf/black pull_request

PMBio
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PMBio
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Commits on Jul 18, 2024

remove unneeded function argument
meyerkm
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Merge branch 'score-calibration' of https://github.com/PMBio/deeprvat into score-calibration
meyerkm
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fixup! Format Python code with psf/black pull_request

PMBio
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PMBio
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Commits on Jul 22, 2024

reduce max computation and set to 1.0
meyerkm
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Merge branch 'score-calibration' of https://github.com/PMBio/deeprvat into score-calibration
meyerkm
committed
fixup! Format Python code with psf/black pull_request

PMBio
authored and
PMBio
committed

Commits on Aug 20, 2024

move max computation to compute_burdens
meyerkm
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fixup! Format Python code with psf/black pull_request

PMBio
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PMBio
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Commits on Aug 21, 2024

Commits on Oct 7, 2024

Commits on Oct 8, 2024

Commits on Oct 9, 2024

Reset default of center_scale_burdens to True
meyerkm
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Commits on Oct 17, 2024

update scaling function
meyerkm
committed
fixup! Format Python code with psf/black pull_request

PMBio
authored and
PMBio
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specify center_scale_burdens option in example configs
meyerkm
committed

Commits on Oct 22, 2024

remove hard-coded annotation length
meyerkm
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fixup! Format Python code with psf/black pull_request

PMBio
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PMBio
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Merge remote-tracking branch 'origin/main' into score-calibration
meyerkm
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Commits on Nov 4, 2024